FC878624

Overview
NameFC878624
Unique NameFC878624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata GN=W PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAK--ESLKGTIK-LNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            K LL + SG A  GE++AV+G+SG+GK+TL++A A R +K  +    TI+ LNG  ++++ ++   AYV QDDL    LT  E L+F A  R+PR +++ +K  RV  +I  L L     T+IG  G
Sbjct:  101 KHLLKNDSGVAYPGELLAVMGSSGAGKTTLLNASAFRSSKGVQISPSTIRMLNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHMTQKQKVQRVDQVIQDLSLGKCQNTLIGVPG 227          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  384 KTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            K K +L++++G    G++ A++G SGSGK++L+D L+ R    ++ G + +NG  +  +  K IS YV QDD+    LT  E LMFAA  +LP  +S   K+ RV +++++LGL   A   IG
Sbjct:  475 KRKQILDNVNGVCPPGQLTALMGLSGSGKTSLLDILSGRKNVGNIDGKVLINGAPV-GKNFKRISGYVTQDDIQIGTLTCREHLMFAALLKLPENMSLEIKQQRVASVLEELGLTRVADNPIG 596          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755
            LLN I+G  + G ++A++G SG+GKSTL+D LANR      KG I +NG+   ++     SAYV Q D+L P+ TV E ++F+A+ RLP ++   +K+  V  +++ L L     ++IGD
Sbjct:  830 LLNGINGYVKPGMLVALMGPSGAGKSTLLDVLANRKTGGHTKGQILINGQE-RTKYFTRTSAYVEQMDILTPVSTVREVILFSAKNRLPNSVPIQEKEEFVDNILETLNLLKIQHSLIGD 948          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG1_MOUSE (ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  390 KTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            KTLL  ISG+   GE++A++G SG+GKSTL++ LA    +  +KG + +NG   + R  + +S Y+MQDD+L P LTV+E +M +A  +L        ++  V+ ++  LGL   A T  G
Sbjct:   98 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG-YRETGMKGAVLINGMPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE--KDEGRREMVKEILTALGLLPCANTRTG 215          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 59/196 (30.10%), Postives = 98/196 (50.00%), Query Frame = 3
Query:  174 ETPVHQILDVSDTSSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            + P  +   V+D + V +     +L F  LT +       + +P   R Q            VP   L      LL+++SG    G + A++G+SG+GK+TL+D LA R      +G I+++G   E +    IS YV Q+D+  P +TVEE+L F+A  RLP+ ++K +KK  V+ ++  + L      ++G  G
Sbjct:  795 DDPNEETALVADANQVISEKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQG-----------VPETRL-----QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPG 974          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 3
Query:  387 TKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVL----ESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755
            TK LLN ++G      I+A++G SGSGKSTL+DALA R+A     G + ++G+VL    + R+    +AYV Q+D+L   LTV E++ ++A  RLP  L++ +    V+A I  +GL   +   IG+
Sbjct:   27 TKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLA-----GNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIVEATITDMGLEECSDRTIGN 148          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: SCRT_DROME (Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 51/124 (41.13%), Postives = 80/124 (64.52%), Query Frame = 3
Query:  384 KTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRI-AKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            + K ++N+ +G  + G +MA++G+SGSGK+TL+  LA R  A   ++G I +NG  +   M + IS YV QDDL    LTV E L F A  RL R +SK ++++ ++ L+++ GL +AA+T IG
Sbjct:   86 RMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHR-ISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIG 208          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 53/141 (37.59%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  342 VTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            V A DP   +   S+   LL DI G  + G+++A++G SG+GKSTL+D LA R     + G I +NG+   S     I AYV Q D+L P  TV E + F+A  RLP  ++K +++I V  +++ L L +     IG  G+
Sbjct:  899 VKADDPDNPKKKKSQRLQLLTDIDGYVKPGQMLALMGPSGAGKSTLLDVLAQRKTGGHITGEILINGKP-PSEFTNRIRAYVEQMDVLPPTQTVREAIAFSARCRLPPEVTKEEREIFVDKIVEVLSLSSIKDLKIGVLGN 1038          

HSP 2 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 44/129 (34.11%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  369 ENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755
            EN   K K LL+D+S   R  ++  +LG  G GKST+   LA ++  +  +G +  NG  +  +      +YV QDD+  P LTV+ET  FA +    + L++ +K++ V   +  LGL++A  T++GD
Sbjct:  142 ENKKVKIK-LLDDVSFFLRPKQMTLILGTPGCGKSTIFQMLAGQLKDKHFEGELLFNGHPINHKNHHRDISYVTQDDIHVPTLTVKETFRFALDCLGKKELTREEKQVSVDNCMKLLGLKHAENTLVGD 269          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG8_HUMAN (ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.078e-16
Identity = 44/120 (36.67%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  399 LNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLK-GTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGD 755
            + ++S + R G+++A++G+SG G+++L+D +  R     +K G I +NG+    ++++   A+V Q + L P LTV ETL F A+ RLPRT S++++  RV+ +I +L LR  A T +G+
Sbjct:   88 IQNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKIKSGQIWINGQPSSPQLVRKCVAHVRQHNQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCADTRVGN 207          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.078e-16
Identity = 55/172 (31.98%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  243 VLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDE 758
            VLSF+++TY VK +   +                               K +L+DI+G  + G + A+LG +G GKS+L+D LA R     L G + +NG    +   K  S YV+QDD++   LTV E L F+A  RLP+ +   +K  R+  +I +LGL   A + +G +
Sbjct:   36 VLSFHHITYRVKVKSGFLVRKTA-------------------------EKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPRGLSGDVLINGAPQPANF-KCSSGYVVQDDVVMGTLTVRENLQFSAALRLPKAMKTHEKNERINTIIKELGLDKVADSKVGTQ 180          
The following BLAST results are available for this feature:
BLAST of FC878624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
WHITE_CERCA2.977e-1640.94Protein white OS=Ceratitis capitata GN=W PE=2 SV=1[more]
ABCGO_DICDI2.977e-1638.21ABC transporter G family member 24 OS=Dictyosteliu... [more]
ABCGI_DICDI2.977e-1640.00ABC transporter G family member 18 OS=Dictyosteliu... [more]
ABCG1_MOUSE2.977e-1638.84ATP-binding cassette sub-family G member 1 OS=Mus ... [more]
AB31G_ARATH2.977e-1630.10ABC transporter G family member 31 OS=Arabidopsis ... [more]
AB13G_ARATH2.977e-1639.37ABC transporter G family member 13 OS=Arabidopsis ... [more]
SCRT_DROME3.888e-1641.13Protein scarlet OS=Drosophila melanogaster GN=st P... [more]
ABCG5_DICDI3.888e-1637.59ABC transporter G family member 5 OS=Dictyostelium... [more]
ABCG8_HUMAN5.078e-1636.67ATP-binding cassette sub-family G member 8 OS=Homo... [more]
ABCG2_RAT5.078e-1631.98ATP-binding cassette sub-family G member 2 OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF18RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878624 ID=FC878624; Name=FC878624; organism=Citrus clementina; type=EST; length=819bp
CTAATCGCGTTGTTGCGGAGAATAATACATCGCCCGCAAGAGACACTTTA
CCGTTCTTCAGTACAAACTCAATGGAGCTGACCCACATCACGCGATCCGC
ATCCGGCGTGTCGCCCACGCTCGGCCAGTTGCTCAAGCGAGTCGGGGACG
TACGGAAGGAGCAAACCGGCGACGAGACTCCGGTCCATCAGATTCTCGAC
GTCAGCGACACAAGCAGCGTCGAAACAAGATCACTGCCTTTCGTTTTGTC
CTTCAACAACCTGACTTACAGCGTCAAAGCTCGCCGCAAGTCCATCACTC
TCCCCGCAGTGTTCCGCCGTCAACCTCATCCCCTCGGCGCCGTCACAGCG
ACGGATCCCGTTCCAGGCGAGAACTTGTTCTCCAAAACAAAGACTCTGTT
GAACGACATCTCCGGCGAGGCGCGCGACGGAGAAATCATGGCGGTCCTTG
GGGCTAGCGGCTCCGGGAAGTCGACTCTAATCGACGCGCTGGCGAATCGT
ATAGCGAAAGAGAGCTTGAAAGGTACCATCAAGCTAAACGGCGAAGTGTT
GGAGTCGAGGATGCTGAAGGTGATATCAGCTTACGTCATGCAAGACGACC
TTCTGTTCCCGATGCTCACCGTCGAGGAGACGCTGATGTTCGCTGCCGAG
TTTCGGCTGCCACGTACACTGTCGAAGTCGAAGAAGAAGATTCGCGTCCA
AGCTCTGATCGATCAGCTCGGCTTAAGGAACGCGGCAAAGACAGTTATAG
GAGACGAAGGACACAGGGGAGTGTCGGGCGGCGACCGACGTCGTGTCTCG
ATTGGAATCGACATAATTC
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