FC878624

Overview
NameFC878624
Unique NameFC878624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 55/176 (31.25%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  237 PFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKT-LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            P  LSFN++ Y V        +PA  + Q                  F++++  LL+DISG  R G + A++G SG+GK+TL+D LA R    +++G IKL+G   +      IS Y  Q D+  P LTV E+++++A  RL   + K+ +K+ V+ ++  + L      ++G  G
Sbjct:  849 PLSLSFNHMNYYVD-------MPAEMKAQG-----------------FTESRLQLLSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGTIEGDIKLSGYPKKQETFARISGYCEQTDIHSPNLTVYESIVYSAWLRLSSEVDKNTRKVFVEEVMSLVELDVLRDALVGLPG 1000          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  369 ENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGL 725
            EN   K  T+L ++ G    GE++A++G SGSGKSTL+D LA R +   + G + +NG+ +     K  S YV Q+D+L    TV ETL F A+ +LP  +S+ +K  RV+ +I+ +GL
Sbjct:   63 ENSNEKEITILYNVGGVIEKGELVALMGPSGSGKSTLLDILAQRKSTGKITGQLLVNGKEIGEAYKKYCS-YVTQEDVLLQTYTVFETLKFYADLKLP-GVSEIEKIKRVEKVIEDVGL 179          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 42/126 (33.33%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  384 KTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            K   LL+D++G  + G + A++G SG+GK+TL+D L+ R  +  +KG I++ G V        +S Y  Q D+  P LTV+E+L ++A  RLP  +S   K   V  +++ + L     +++G  G
Sbjct:  813 KKLQLLSDVTGAFKPGVLTALMGVSGAGKTTLLDVLSGRKTRGDIKGQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTVQESLKYSAWLRLPCNISSETKSAIVNEVLETIELEEIKDSLVGVPG 938          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            LL+ ISG  R G + A++G SG+GK+TL+D L+ R     ++G I ++G          IS Y  Q+D+  P +TV E+L+F+A  RLP+ ++  +KKI V  +++ + L      ++G  G
Sbjct:  935 LLSGISGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIEGEIYISGYPKNQATFARISGYCEQNDIHSPQITVRESLLFSAFLRLPKEVNDQEKKIFVDEVMELVELTGLKDAIVGLPG 1056          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: BROWN_DROVI (Protein brown OS=Drosophila virilis GN=bw PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 41/118 (34.75%), Postives = 76/118 (64.41%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVI 749
            +L+D+SG  + G+++A+LG SG+GK+TL+ A++ R+ + +L G + LNG  +E   +  IS+++ + ++     T  + L F + F++ R  +KS+K+  V  L+  +GLR+AA T I
Sbjct:   45 ILHDVSGHLKTGDLIAILGGSGAGKTTLLAAISQRL-RGNLTGDVVLNGMAMERDQMTRISSFLREFEINVKTFTAYDDLYFMSHFKMHRRTTKSEKRQAVSDLLLAVGLRDAAHTRI 161          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 49/193 (25.39%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  198 DVSDTSSVETRSL-----PFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            +++D S    R +     P  L+F+N+ YSV   ++                       +    +      LL  +SG  R G + A++G SG+GK+TL+D LA R     ++G I ++G   +      +S Y  Q+D+  P +TV E+L+F+A  RLP+ +  + +K+ ++ +++ + L+     ++G  G
Sbjct:  846 EIADNSQPTQRGMVLPFAPLSLTFDNIKYSVDMPQE-----------------------MKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPG 1015          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: CDR4_CANAL (ABC transporter CDR4 OS=Candida albicans GN=CDR4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 47/128 (36.72%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  381 SKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKL-NGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            S+ + +L+ +SG  + G++ A++GASG+GK+TL++AL++R+    +   I+L NG  L+S   + I  YV Q DL     TV E L FAA  R P+++S+ +K   V  +I  L +   A  V+G  G
Sbjct:  859 SEDRVILDHVSGWVKPGQVTALMGASGAGKTTLLNALSDRLTTGVVTEGIRLVNGRPLDSSFQRSI-GYVQQQDLHLETSTVREALEFAAYLRQPKSVSRKEKNEYVDYIIRLLEMEQYADAVVGVSG 985          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 50/173 (28.90%), Postives = 85/173 (49.13%), Query Frame = 3
Query:  243 VLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            VL F  L+ S    R S+ +P   + Q                 +      LL  +SG  R G + A++G SG+GK+TL+D LA R     ++G I+++G   +      IS Y  Q+D+  P +TV E+L+F+A  RLP  +    +K+ ++ ++D + L +    ++G  G
Sbjct:  844 VLPFAPLSISFNDVRYSVDMPEAMKAQ----------------GITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPG 1000          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 41/126 (32.54%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  384 KTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            KT+ LL DI+G  + G + +++G SG+GK+TL+D L+ R  +  +KG I++ G          +S Y  Q D+  P +TVEE+L ++A  RLP  +    K   V+ +++ + L +   +++G  G
Sbjct:  820 KTRQLLFDITGALKPGVLTSLMGVSGAGKTTLLDVLSGRKTRGIIKGEIRVGGYPKVQETFARVSGYCEQFDIHSPNITVEESLKYSAWLRLPYNIDAKTKNELVKEVLETVELEDIKDSMVGLPG 945          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 41/122 (33.61%), Postives = 72/122 (59.02%), Query Frame = 3
Query:  396 LLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEG 761
            LL  ++G  R G + A++G SG+GK+TL+D LA R     + G I ++G     +    IS Y  Q D+  P +TV E+L+++A  RLP+ + K+K+KI ++ +++ + L    + ++G  G
Sbjct:  852 LLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPG 973          
The following BLAST results are available for this feature:
BLAST of FC878624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
PDR5_ORYSJ2.134e-1431.25Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
ABCG8_DICDI2.134e-1440.34ABC transporter G family member 8 OS=Dictyostelium... [more]
AB43G_ARATH2.134e-1433.33ABC transporter G family member 43 OS=Arabidopsis ... [more]
PDR15_ORYSJ2.787e-1435.25Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
BROWN_DROVI2.787e-1434.75Protein brown OS=Drosophila virilis GN=bw PE=2 SV=... [more]
PDR2_ORYSJ3.639e-1425.39Probable pleiotropic drug resistance protein 2 OS=... [more]
CDR4_CANAL3.639e-1436.72ABC transporter CDR4 OS=Candida albicans GN=CDR4 P... [more]
PDR4_ORYSJ8.108e-1428.90Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
AB41G_ARATH8.108e-1432.54ABC transporter G family member 41 OS=Arabidopsis ... [more]
AB40G_ARATH1.059e-1333.61ABC transporter G family member 40 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF18RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878624 ID=FC878624; Name=FC878624; organism=Citrus clementina; type=EST; length=819bp
CTAATCGCGTTGTTGCGGAGAATAATACATCGCCCGCAAGAGACACTTTA
CCGTTCTTCAGTACAAACTCAATGGAGCTGACCCACATCACGCGATCCGC
ATCCGGCGTGTCGCCCACGCTCGGCCAGTTGCTCAAGCGAGTCGGGGACG
TACGGAAGGAGCAAACCGGCGACGAGACTCCGGTCCATCAGATTCTCGAC
GTCAGCGACACAAGCAGCGTCGAAACAAGATCACTGCCTTTCGTTTTGTC
CTTCAACAACCTGACTTACAGCGTCAAAGCTCGCCGCAAGTCCATCACTC
TCCCCGCAGTGTTCCGCCGTCAACCTCATCCCCTCGGCGCCGTCACAGCG
ACGGATCCCGTTCCAGGCGAGAACTTGTTCTCCAAAACAAAGACTCTGTT
GAACGACATCTCCGGCGAGGCGCGCGACGGAGAAATCATGGCGGTCCTTG
GGGCTAGCGGCTCCGGGAAGTCGACTCTAATCGACGCGCTGGCGAATCGT
ATAGCGAAAGAGAGCTTGAAAGGTACCATCAAGCTAAACGGCGAAGTGTT
GGAGTCGAGGATGCTGAAGGTGATATCAGCTTACGTCATGCAAGACGACC
TTCTGTTCCCGATGCTCACCGTCGAGGAGACGCTGATGTTCGCTGCCGAG
TTTCGGCTGCCACGTACACTGTCGAAGTCGAAGAAGAAGATTCGCGTCCA
AGCTCTGATCGATCAGCTCGGCTTAAGGAACGCGGCAAAGACAGTTATAG
GAGACGAAGGACACAGGGGAGTGTCGGGCGGCGACCGACGTCGTGTCTCG
ATTGGAATCGACATAATTC
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