FC878630
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: S72L2_HUMAN (Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2 OS=Homo sapiens PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 5.323e-41 Identity = 85/190 (44.74%), Postives = 121/190 (63.68%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R A+VC SN NRSMEAH +L++ G V S+GT +HV+LPGP P VY+F T YK+M++DL RKD E Y RNGIL +L RN +K P+R+Q+ FD++FT EE V+DTVVEDL +REQ + V VIN+E++D E+A +G L ++CQ ++ E++ + L+++ FY Sbjct: 7 RVAVVCVSNVNRSMEAHSILRKKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKEMYNDLLRKDRECYTRNGILHILGRNERIKPGPERFQE--CTDFFDVIFTCEESVYDTVVEDLCSREQQTFQPVHVINMEIQDTLEDATLGAFLICEICQCLQQSDDMEDNLEELLLQMEEKAGKSFLHTVCFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_YARLI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Yarrowia lipolytica GN=SSU72 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.712e-39 Identity = 78/187 (41.71%), Postives = 122/187 (65.24%), Query Frame = 1 Query: 259 VCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRH-RRKLLYSISFY 816 VC+SNQNRSMEAH +LK GFDV SYGTG+ V+LPGP+ +PN+Y FGTPY ++++L +D LY NG+L ML RN +K AP+RW ++ FD+VFT EE+ F+ V +DL R + + V VIN++++DNHE++ IG + L + I+ +++++H + L++++ ++ Sbjct: 9 VCASNQNRSMEAHKVLKEAGFDVESYGTGSAVRLPGPAYDKPNIYAFGTPYDDIYNELSAQDERLYTANGLLTMLDRNRKIKTAPERWVEH--KNVFDVVFTCEERCFEAVCDDLMDRGEKLQRPVHVINVDIRDNHEDSVIGAQGILKLARSLADSKDLDAQIMGIMDSWQEQHPKLPLMHAVGYF 193
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_ASHGO (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Ashbya gossypii GN=SSU72 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.712e-39 Identity = 82/158 (51.90%), Postives = 107/158 (67.72%), Query Frame = 1 Query: 235 TMKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708 T R VC+SN NRSME+H +LK G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY +++DL + E YK NG+L ML RN +K AP++W D+ FD VFT EE+ FD+V EDL R K V VINL+++D++E A IGGR +L Sbjct: 81 TSTLRLCTVCASNNNRSMESHRVLKEAGYDVSSYGTGSAVRLPGLSIDKPNVYPFGTPYNDIYNDLLAQSAERYKSNGLLEMLDRNRRIKKAPEKWHDS--QKVFDFVFTCEERCFDSVCEDLMNRGGQLNKIVHVINLDIRDDNENAKIGGRAMLEL 236
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: S72L3_HUMAN (Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 3 OS=Homo sapiens PE=3 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 2.921e-39 Identity = 84/190 (44.21%), Postives = 119/190 (62.63%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R A+VC SN NRSMEAH +L+R G V S+GT +HV+LPG P VY+F T YK+M++DL RKD E Y NGIL +L RN +K P+R+Q+ FD++FT EE+V+DTVVEDL +REQ + V VIN+++KD E A +G L ++CQ ++ E++ + L+++ FY Sbjct: 7 RVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATTYKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQE--CTEFFDVIFTCEERVYDTVVEDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKAGKSFLHTVCFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_GIBZE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gibberella zeae GN=SSU72 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.893e-38 Identity = 87/174 (50.00%), Postives = 109/174 (62.64%), Query Frame = 1 Query: 241 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD---------NALD--------GSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708 K ++ VC+SN NRSMEAH L + + V S+GTG+ V+LPGP++ +PNVY F T Y MF +L KD LYK NGIL ML RN GVK P+RWQD +A D G DIV T EE+ +D VV+DL R P + V VIN+E+KDNHEEAA+GG+ DL Sbjct: 24 KLKFCTVCASNNNRSMEAHLRLSQADYPVISFGTGSLVRLPGPTITQPNVYHFNKTSYDSMFKELESKDARLYKNNGILNMLNRNRGVKWGPERWQDWQVGVPRLQHAKDRGSEGTEGGLVDIVITCEERCWDAVVDDLMNRGSPLNRPVHVINVEIKDNHEEAAVGGQGILDL 197
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_CANGA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Candida glabrata GN=SSU72 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 5.509e-38 Identity = 77/154 (50.00%), Postives = 106/154 (68.83%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708 ++ VC+SN NRSME+H +L+ G++VSSYGTG+ V+LPG S +PNVY FGTPY +++DL + E YK NG+L ML RN +K AP++WQ+ +FD VFT EE+ FD V EDL R K V VIN++++D++E A IGGR +L Sbjct: 8 KFCTVCASNNNRSMESHRILQEAGYEVSSYGTGSAVRLPGLSFDKPNVYPFGTPYNDIYNDLLSQSAERYKANGLLQMLDRNRRLKKAPEKWQEGT--KTFDFVFTCEERCFDAVCEDLMNRGGRLNKIVHVINIDIRDDNENAKIGGRAILEL 159
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_NEUCR (RNA polymerase II subunit A C-terminal domain phosphatase ssu-72 OS=Neurospora crassa GN=ssu-72 PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 7.955e-37 Identity = 80/174 (45.98%), Postives = 109/174 (62.64%), Query Frame = 1 Query: 241 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD----------------NALDGSF-DIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708 K ++ VC+SNQNRSME H L + V S+GTG+ V+LPGPS+ +PNVY+F T Y ++ +L KDP LY+ NG+L ML RN VK P+RWQD + ++G D+V T EE+ +D V+EDL R P + V VIN+++KDNHEEA++GGR DL Sbjct: 35 KLKFCTVCASNQNRSMEGHLRLSLANYPVISFGTGSLVRLPGPSITQPNVYKFNETSYDSIYRELEAKDPRLYRANGLLNMLGRNRQVKWGPERWQDWQIGMPRTKHKDDKGADGMEGGVADVVITCEERCWDAVIEDLLNRGSPLNRPVHVINIDIKDNHEEASVGGRAIVDL 208
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_YEAST (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Saccharomyces cerevisiae GN=SSU72 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.357e-36 Identity = 75/154 (48.70%), Postives = 105/154 (68.18%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708 ++ VC+SN NRSME+H +L+ G++VSSYGTG+ V+LPG S+ +PNVY FGTPY +++DL + + YK NG+L ML RN +K AP++WQ++ FD VFT EE+ FD V EDL R K V VIN+++KD+ E A IG + +L Sbjct: 10 KFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYNDIYNDLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQEST--KVFDFVFTCEERCFDAVCEDLMNRGGKLNKIVHVINVDIKDDDENAKIGSKAILEL 161
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_KLULA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Kluyveromyces lactis GN=SSU72 PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.357e-36 Identity = 74/149 (49.66%), Postives = 103/149 (69.13%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGR 693 ++ VC+SN NRSME+H +L+ G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY +++DL + + YK+NG+L ML RN +K AP++W D FD VFT EE+ FD+V EDL R +IN+++KD++E A IGGR Sbjct: 11 KFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTPYDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGR--KVFDFVFTCEERCFDSVCEDLMNRGGQLNLIAHIINIDIKDDNENAKIGGR 157
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_DEBHA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Debaryomyces hansenii GN=SSU72 PE=3 SV=2) HSP 1 Score: 148.673 bits (374), Expect = 4.365e-35 Identity = 70/153 (45.75%), Postives = 107/153 (69.93%), Query Frame = 1 Query: 259 VCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKD-PELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR-------EQPFMKTVLVINLEVKDNHEEAAIGGR 693 VC++N NRSME+H LK G++V S+GTG+ V+LPGPS+ +PNVYEFGTPY ++ DL ++ ++Y+ NG++ M+ RN +K AP++W +NA G FD+V T EE+ FD V++DL R + + V +IN+++KD++E A IGG+ Sbjct: 11 VCAANNNRSMESHKQLKDAGYNVRSFGTGSAVRLPGPSVDKPNVYEFGTPYDDIYRDLTSQEYHKMYESNGLIRMINRNRHIKRAPEKWHNNASAGKFDLVITCEERCFDLVLDDLMVRLVNKDQADTEIKQAVHIINIDIKDDYENAVIGGK 163 The following BLAST results are available for this feature:
BLAST of FC878630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878630 ID=FC878630; Name=FC878630; organism=Citrus clementina; type=EST; length=901bpback to top |