FC878630

Overview
NameFC878630
Unique NameFC878630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: S72L2_HUMAN (Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2 OS=Homo sapiens PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.323e-41
Identity = 85/190 (44.74%), Postives = 121/190 (63.68%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R A+VC SN NRSMEAH +L++ G  V S+GT +HV+LPGP    P VY+F T YK+M++DL RKD E Y RNGIL +L RN  +K  P+R+Q+      FD++FT EE V+DTVVEDL +REQ   + V VIN+E++D  E+A +G  L  ++CQ              ++   E++  +  L+++ FY
Sbjct:    7 RVAVVCVSNVNRSMEAHSILRKKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKEMYNDLLRKDRECYTRNGILHILGRNERIKPGPERFQE--CTDFFDVIFTCEESVYDTVVEDLCSREQQTFQPVHVINMEIQDTLEDATLGAFLICEICQCLQQSDDMEDNLEELLLQMEEKAGKSFLHTVCFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_YARLI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Yarrowia lipolytica GN=SSU72 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.712e-39
Identity = 78/187 (41.71%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  259 VCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRH-RRKLLYSISFY 816
            VC+SNQNRSMEAH +LK  GFDV SYGTG+ V+LPGP+  +PN+Y FGTPY  ++++L  +D  LY  NG+L ML RN  +K AP+RW ++     FD+VFT EE+ F+ V +DL  R +   + V VIN++++DNHE++ IG +    L +              I+ +++++H +  L++++ ++
Sbjct:    9 VCASNQNRSMEAHKVLKEAGFDVESYGTGSAVRLPGPAYDKPNIYAFGTPYDDIYNELSAQDERLYTANGLLTMLDRNRKIKTAPERWVEH--KNVFDVVFTCEERCFEAVCDDLMDRGEKLQRPVHVINVDIRDNHEDSVIGAQGILKLARSLADSKDLDAQIMGIMDSWQEQHPKLPLMHAVGYF 193          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_ASHGO (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Ashbya gossypii GN=SSU72 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.712e-39
Identity = 82/158 (51.90%), Postives = 107/158 (67.72%), Query Frame = 1
Query:  235 TMKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708
            T   R   VC+SN NRSME+H +LK  G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY  +++DL  +  E YK NG+L ML RN  +K AP++W D+     FD VFT EE+ FD+V EDL  R     K V VINL+++D++E A IGGR   +L
Sbjct:   81 TSTLRLCTVCASNNNRSMESHRVLKEAGYDVSSYGTGSAVRLPGLSIDKPNVYPFGTPYNDIYNDLLAQSAERYKSNGLLEMLDRNRRIKKAPEKWHDS--QKVFDFVFTCEERCFDSVCEDLMNRGGQLNKIVHVINLDIRDDNENAKIGGRAMLEL 236          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: S72L3_HUMAN (Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 3 OS=Homo sapiens PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.921e-39
Identity = 84/190 (44.21%), Postives = 119/190 (62.63%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R A+VC SN NRSMEAH +L+R G  V S+GT +HV+LPG     P VY+F T YK+M++DL RKD E Y  NGIL +L RN  +K  P+R+Q+      FD++FT EE+V+DTVVEDL +REQ   + V VIN+++KD  E A +G  L  ++CQ              ++   E++  +  L+++ FY
Sbjct:    7 RVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATTYKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQE--CTEFFDVIFTCEERVYDTVVEDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQMEEKAGKSFLHTVCFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_GIBZE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gibberella zeae GN=SSU72 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.893e-38
Identity = 87/174 (50.00%), Postives = 109/174 (62.64%), Query Frame = 1
Query:  241 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD---------NALD--------GSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708
            K ++  VC+SN NRSMEAH  L +  + V S+GTG+ V+LPGP++ +PNVY F  T Y  MF +L  KD  LYK NGIL ML RN GVK  P+RWQD         +A D        G  DIV T EE+ +D VV+DL  R  P  + V VIN+E+KDNHEEAA+GG+   DL
Sbjct:   24 KLKFCTVCASNNNRSMEAHLRLSQADYPVISFGTGSLVRLPGPTITQPNVYHFNKTSYDSMFKELESKDARLYKNNGILNMLNRNRGVKWGPERWQDWQVGVPRLQHAKDRGSEGTEGGLVDIVITCEERCWDAVVDDLMNRGSPLNRPVHVINVEIKDNHEEAAVGGQGILDL 197          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_CANGA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Candida glabrata GN=SSU72 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.509e-38
Identity = 77/154 (50.00%), Postives = 106/154 (68.83%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708
            ++  VC+SN NRSME+H +L+  G++VSSYGTG+ V+LPG S  +PNVY FGTPY  +++DL  +  E YK NG+L ML RN  +K AP++WQ+     +FD VFT EE+ FD V EDL  R     K V VIN++++D++E A IGGR   +L
Sbjct:    8 KFCTVCASNNNRSMESHRILQEAGYEVSSYGTGSAVRLPGLSFDKPNVYPFGTPYNDIYNDLLSQSAERYKANGLLQMLDRNRRLKKAPEKWQEGT--KTFDFVFTCEERCFDAVCEDLMNRGGRLNKIVHVINIDIRDDNENAKIGGRAILEL 159          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_NEUCR (RNA polymerase II subunit A C-terminal domain phosphatase ssu-72 OS=Neurospora crassa GN=ssu-72 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.955e-37
Identity = 80/174 (45.98%), Postives = 109/174 (62.64%), Query Frame = 1
Query:  241 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD----------------NALDGSF-DIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708
            K ++  VC+SNQNRSME H  L    + V S+GTG+ V+LPGPS+ +PNVY+F  T Y  ++ +L  KDP LY+ NG+L ML RN  VK  P+RWQD                + ++G   D+V T EE+ +D V+EDL  R  P  + V VIN+++KDNHEEA++GGR   DL
Sbjct:   35 KLKFCTVCASNQNRSMEGHLRLSLANYPVISFGTGSLVRLPGPSITQPNVYKFNETSYDSIYRELEAKDPRLYRANGLLNMLGRNRQVKWGPERWQDWQIGMPRTKHKDDKGADGMEGGVADVVITCEERCWDAVIEDLLNRGSPLNRPVHVINIDIKDNHEEASVGGRAIVDL 208          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_YEAST (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Saccharomyces cerevisiae GN=SSU72 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.357e-36
Identity = 75/154 (48.70%), Postives = 105/154 (68.18%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708
            ++  VC+SN NRSME+H +L+  G++VSSYGTG+ V+LPG S+ +PNVY FGTPY  +++DL  +  + YK NG+L ML RN  +K AP++WQ++     FD VFT EE+ FD V EDL  R     K V VIN+++KD+ E A IG +   +L
Sbjct:   10 KFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYNDIYNDLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQEST--KVFDFVFTCEERCFDAVCEDLMNRGGKLNKIVHVINVDIKDDDENAKIGSKAILEL 161          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_KLULA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Kluyveromyces lactis GN=SSU72 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.357e-36
Identity = 74/149 (49.66%), Postives = 103/149 (69.13%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGR 693
            ++  VC+SN NRSME+H +L+  G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY  +++DL  +  + YK+NG+L ML RN  +K AP++W D      FD VFT EE+ FD+V EDL  R         +IN+++KD++E A IGGR
Sbjct:   11 KFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTPYDDIYNDLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGR--KVFDFVFTCEERCFDSVCEDLMNRGGQLNLIAHIINIDIKDDNENAKIGGR 157          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_DEBHA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Debaryomyces hansenii GN=SSU72 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 4.365e-35
Identity = 70/153 (45.75%), Postives = 107/153 (69.93%), Query Frame = 1
Query:  259 VCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKD-PELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR-------EQPFMKTVLVINLEVKDNHEEAAIGGR 693
            VC++N NRSME+H  LK  G++V S+GTG+ V+LPGPS+ +PNVYEFGTPY  ++ DL  ++  ++Y+ NG++ M+ RN  +K AP++W +NA  G FD+V T EE+ FD V++DL  R       +    + V +IN+++KD++E A IGG+
Sbjct:   11 VCAANNNRSMESHKQLKDAGYNVRSFGTGSAVRLPGPSVDKPNVYEFGTPYDDIYRDLTSQEYHKMYESNGLIRMINRNRHIKRAPEKWHNNASAGKFDLVITCEERCFDLVLDDLMVRLVNKDQADTEIKQAVHIINIDIKDDYENAVIGGK 163          
The following BLAST results are available for this feature:
BLAST of FC878630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
S72L2_HUMAN5.323e-4144.74Putative RNA polymerase II subunit A C-terminal do... [more]
SSU72_YARLI1.712e-3941.71RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_ASHGO1.712e-3951.90RNA polymerase II subunit A C-terminal domain phos... [more]
S72L3_HUMAN2.921e-3944.21Putative RNA polymerase II subunit A C-terminal do... [more]
SSU72_GIBZE1.893e-3850.00RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_CANGA5.509e-3850.00RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_NEUCR7.955e-3745.98RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_YEAST1.357e-3648.70RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_KLULA1.357e-3649.66RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_DEBHA4.365e-3545.75RNA polymerase II subunit A C-terminal domain phos... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878630 ID=FC878630; Name=FC878630; organism=Citrus clementina; type=EST; length=901bp
TGTATCTGGTGCAATTTCCTCAGAGTCGAAATCTCGAAATAGACCCAAAG
CCCAAAACAGTGGCGTCGAGCACCAAAGAGAACCAAATCAACAACGCCGC
TGAAATCCCGCCTCATCGCACTCCGGTCGCCACCAGCACACTGCCGCAAG
CAGTCACCGTCGACTGTACTAACATTTTTTGTAGAGACTCTACTCGAGTT
GGAATTGGATCAAGAAGACTGGGAGTAGGCAATCACCATGAAATACCGGT
ATGCCATGGTATGCTCGTCCAACCAGAACCGAAGTATGGAGGCACATTAT
CTCCTCAAGAGACATGGCTTCGACGTTTCATCCTATGGCACTGGAGCTCA
CGTTAAGCTCCCTGGACCATCACTGAGAGAACCTAATGTCTACGAATTTG
GTACTCCCTACAAACAGATGTTTGATGATCTCCGCCGCAAAGACCCCGAA
CTGTACAAGCGTAATGGTATTTTGCCAATGCTTAAAAGGAATATAGGTGT
GAAAGCGGCACCTCAACGTTGGCAAGATAATGCTCTTGATGGTTCCTTTG
ATATTGTTTTTACTTTTGAAGAAAAGGTTTTTGACACGGTTGTTGAAGAT
CTCAATACTCGAGAACAGCCTTTTATGAAAACTGTTCTGGTGATCAACTT
GGAGGTGAAAGATAACCATGAGGAGGCAGCCATTGGAGGACGACTAACTT
TTGATCTGTGCCAGGAGATCGAAGCAGCTGAATCATGGGAGGAGTCTATT
GATGACATTATAGCTGCATTTGAGAAACGGCACCGGCGAAAGCTCTTGTA
TAGTATATCTTTCTATTGAAGACATCTATATACTCGAATTGGATGACTCA
TCTTTTCCAACCTCGAGGTCTAATTTCGTAAGGTCAGTGAATCTCCTGAC
T
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