FC878630

Overview
NameFC878630
Unique NameFC878630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_CHAGB (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Chaetomium globosum GN=SSU72 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.659e-34
Identity = 77/174 (44.25%), Postives = 107/174 (61.49%), Query Frame = 1
Query:  241 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALD-----------------GSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708
            K ++  VC+SNQNRSME H  L +  + V S+GTG+ V+LPGP++ +PNVY+F  T Y  ++ +L  KDP LY+ NG+L ML RN  +K  P+RWQD  +                  G  DIV T EE+ +D VV+DL  R  P  + V VIN+++KDNH++A+IGG    DL
Sbjct:   26 KLKFCTVCASNQNRSMEGHLRLAQANYPVISFGTGSLVRLPGPTITQPNVYKFNETSYDSIYRELEAKDPRLYRANGLLNMLGRNRVIKWGPERWQDWQVGMPRVKHEKDQGSIGMEAGVPDIVITCEERCWDAVVDDLLNRGSPLNRPVHVINIDIKDNHQDASIGGGAMVDL 199          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_CRYNE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cryptococcus neoformans GN=SSU72 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.075e-33
Identity = 72/171 (42.11%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  304 LKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            + ++ F V S GTG+ V+LPGP++ +PNVY FGTPY  ++ DL  +DP+LY RNGILPML RN  VK AP++WQ+       D+V T EE+ +D V +DL TR   + + + +IN+E+KDN EEA I G+   +L +              I+ A   +H   LL+++ FY
Sbjct:   18 ITKNSFRVVSAGTGSAVRLPGPAIDKPNVYRFGTPYDDIYRDLESQDPQLYTRNGILPMLDRNRKVKKAPEKWQE-LKSVLADVVITCEERCYDAVCDDLLTRSGEYNRPIHIINIEIKDNPEEAHIAGQSILELARAIEASDDLDSDIDAILNAHGDKHPHTLLHTVGFY 187          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_ASPFU (RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Aspergillus fumigatus GN=ssu72 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.189e-32
Identity = 75/180 (41.67%), Postives = 106/180 (58.89%), Query Frame = 1
Query:  235 TMKYRYAMVCSSNQNRSMEAHYLLKR--HGFDVSSYGTGAHVKLPGPSLREPNVYEFGTP-YKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD-------------------NALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708
            + K ++  VC+SNQNRSMEAH  L      F V S+GTG+ V+LPGPS+ +PNVY F T  Y QM+D+L  KD  LY+ NG+L ML RN  +K  P+R+QD                       G+ D++ T EE+ +D VV+DL  +     + V V N++++DNHEEA +GG+   +L
Sbjct:   50 SFKLKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSYSQMYDELLAKDERLYRNNGLLNMLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGTEGGTVDVIITCEERCWDAVVDDLMNKGAALNRPVHVFNVDIRDNHEEALVGGKAILEL 229          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_ASPOR (RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Aspergillus oryzae GN=ssu72 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.552e-32
Identity = 76/178 (42.70%), Postives = 105/178 (58.99%), Query Frame = 1
Query:  241 KYRYAMVCSSNQNRSMEAHYLLKR--HGFDVSSYGTGAHVKLPGPSLREPNVYEFGTP-YKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD-------------------NALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 708
            K R+  VC+SNQNRSMEAH  L      F V S+GTG+ V+LPGPS+ +PNVY F T  Y QM+++L  KD  LY+ NG+L ML+RN  +K  P+R+QD                       G  D++ T EE+ +D VV+DL  +     + V V N+++KDNHEEA +GG+   +L
Sbjct:   27 KLRFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSYSQMYEELYSKDERLYRNNGLLNMLERNRNLKWGPERFQDWVPGMPRVDHVAKGDKGALGTEGGVVDVIITCEERCWDAVVDDLMNKGSLLNRPVHVFNVDIKDNHEEALVGGKAILEL 204          
The following BLAST results are available for this feature:
BLAST of FC878630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SSU72_CHAGB1.659e-3444.25RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_CRYNE1.075e-3342.11RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_ASPFU1.189e-3241.67RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_ASPOR1.552e-3242.70RNA polymerase II subunit A C-terminal domain phos... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878630 ID=FC878630; Name=FC878630; organism=Citrus clementina; type=EST; length=901bp
TGTATCTGGTGCAATTTCCTCAGAGTCGAAATCTCGAAATAGACCCAAAG
CCCAAAACAGTGGCGTCGAGCACCAAAGAGAACCAAATCAACAACGCCGC
TGAAATCCCGCCTCATCGCACTCCGGTCGCCACCAGCACACTGCCGCAAG
CAGTCACCGTCGACTGTACTAACATTTTTTGTAGAGACTCTACTCGAGTT
GGAATTGGATCAAGAAGACTGGGAGTAGGCAATCACCATGAAATACCGGT
ATGCCATGGTATGCTCGTCCAACCAGAACCGAAGTATGGAGGCACATTAT
CTCCTCAAGAGACATGGCTTCGACGTTTCATCCTATGGCACTGGAGCTCA
CGTTAAGCTCCCTGGACCATCACTGAGAGAACCTAATGTCTACGAATTTG
GTACTCCCTACAAACAGATGTTTGATGATCTCCGCCGCAAAGACCCCGAA
CTGTACAAGCGTAATGGTATTTTGCCAATGCTTAAAAGGAATATAGGTGT
GAAAGCGGCACCTCAACGTTGGCAAGATAATGCTCTTGATGGTTCCTTTG
ATATTGTTTTTACTTTTGAAGAAAAGGTTTTTGACACGGTTGTTGAAGAT
CTCAATACTCGAGAACAGCCTTTTATGAAAACTGTTCTGGTGATCAACTT
GGAGGTGAAAGATAACCATGAGGAGGCAGCCATTGGAGGACGACTAACTT
TTGATCTGTGCCAGGAGATCGAAGCAGCTGAATCATGGGAGGAGTCTATT
GATGACATTATAGCTGCATTTGAGAAACGGCACCGGCGAAAGCTCTTGTA
TAGTATATCTTTCTATTGAAGACATCTATATACTCGAATTGGATGACTCA
TCTTTTCCAACCTCGAGGTCTAATTTCGTAAGGTCAGTGAATCTCCTGAC
T
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