FC878690

Overview
NameFC878690
Unique NameFC878690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11720 contig Ccv1_Contig11720:251..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878690 vs. ExPASy Swiss-Prot
Match: 14338_ORYSJ (Putative 14-3-3-like protein GF14-H OS=Oryza sativa subsp. japonica GN=GF14H PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.792e-49
Identity = 106/235 (45.11%), Postives = 149/235 (63.40%), Query Frame = 3
Query:   72 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDM 776
            RE+ V LAKLAEQAERY++MV+FM +L        +++ EER L SV +K  IG+ RA+WRI+ S+EQK      ++    +  Y+ KVE EL  VC  +L ++  H +P A +GE+ VF+ KMKGDYYRYLAEF  G E+KAA + ++++Y+A     L  L                   EI+NS E+A  +AKQA +EA AE+++ G E YKDS L+MQLL++NL LWTS++
Sbjct:    4 REKVVRLAKLAEQAERYDDMVEFMKTLARMDV---DMSAEERLLFSVGFKKTIGARRASWRILESLEQKVTA--GDQPGVTINGYKKKVEDELRAVCNEVLSIIAIHCLPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAATDQSLMAYQAWPCAQLFSL------------------LEIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSEL 215          
BLAST of FC878690 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.100e-43
Identity = 100/203 (49.26%), Postives = 119/203 (58.62%), Query Frame = 3
Query:  180 LTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQIDE 788
            L+ EERNLLSVAYKNV+G+ R++WR+ISSIEQK                                                  FYLKMKGDYYRYLAE   G++R    E++  +Y  A +I+   + PTHPIRLGLALN+SVFYYEI             AF++AIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD Q D+
Sbjct:   14 LSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTS------------------------------------------------FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEI------------TAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDD 156          
BLAST of FC878690 vs. ExPASy Swiss-Prot
Match: 1433X_MAIZE (14-3-3-like protein (Fragment) OS=Zea mays PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 3
Query:  621 ILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQID 785
            ILNS ++AC +AKQAF+EAI+ELD+LGEESYKDSTLIMQLL DNLTLWTSD   D
Sbjct:    1 ILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLXDNLTLWTSDTNED 55          
The following BLAST results are available for this feature:
BLAST of FC878690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
14338_ORYSJ2.792e-4945.11Putative 14-3-3-like protein GF14-H OS=Oryza sativ... [more]
1433G_SHEEP5.100e-4349.2614-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]
1433X_MAIZE2.158e-1778.1814-3-3-like protein (Fragment) OS=Zea mays PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA64AF11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878690 ID=FC878690; Name=FC878690; organism=Citrus clementina; type=EST; length=847bp
CTTTGAAGAAGATCCAATTCCCCTCCAGTTAACTTTACAGTTTCTGCAAT
TCTGCTATGGGAACCCCGACGAGAGAGCAATACGTTTACCTGGCGAAACT
CGCCGAGCAAGCCGAGCGCTATGAAGAGATGGTTAAGTTCATGGACAGCC
TCGTCACTTCCTCCACTCCGGCGACTGAACTCACCGTCGAGGAGCGCAAC
CTCCTCTCCGTTGCTTACAAGAACGTCATCGGCTCTCTTCGCGCCGCGTG
GCGTATTATCTCCTCTATCGAGCAGAAAGAGGAAGGCCGCAAGAACGAGG
AACACGTCTCGCTGGTCAAAGACTATCGGTCAAAGGTAGAGTCTGAGTTA
TCTGACGTGTGCGGGAGCATATTGAAGTTGCTGGACTCGCACCTTGTGCC
TTCGGCTACTGCTGGTGAGTCCAAAGTCTTCTATTTGAAGATGAAGGGAG
ATTACTACCGTTACTTGGCGGAGTTTAAAGTTGGTGATGAGAGGAAGGCC
GCCGCTGAAAACACTATGTTGTCTTATAAGGCGGCTCAGGATATTGCACT
GACTGATCTGGCGCCAACACACCCTATAAGGTTGGGGCTGGCACTCAACT
TCTCAGTGTTTTACTATGAGATTCTCAATTCATCAGAGAAAGCTTGTACC
ATGGCCAAACAGGCCTTTGAGGAGGCCATTGCTGAGCTGGACACTTTGGG
TGAAGAATCCTACAAGGATAGCACTCTTATCATGCAATTGCTAAGAGACA
ACCTCACTCTGTGGACCTCAGATATGCAGATAGATGAGGCATAAGGGTAT
GGATCGTTTGCTCCTCTGGGGAGGTGGGCTTTTGAATGTCATGAATT
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