FC878701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: RAE1L_MACFA (mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.463e-41 Identity = 110/285 (38.60%), Postives = 153/285 (53.68%), Query Frame = 1 Query: 31 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNR 834 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + S + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATAGR + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR + A +DI Y VN IAFHP++GT AT G DG + WD + R Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERYYCADVIYPMAVVATAGRGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHRSNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: RAE1L_DANRE (mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 7.262e-41 Identity = 107/284 (37.68%), Postives = 152/284 (53.52%), Query Frame = 1 Query: 31 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLYDASAN---VLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS---EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNR 834 P E+ +PP D IS L FS + + L+ SW VR ++ N V + + MH GPVLD C+ DD S F+AS D T + + + + +H+ P+R I + A ++TGSWDK+LK WD R + + PER Y +V VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR + A +Y VNAI+FHP++GT AT G DG + WD + R Sbjct: 28 PMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEGPIRTIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMM-----SLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDAR 305
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: RAEL1_PONAB (mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.239e-40 Identity = 109/285 (38.25%), Postives = 152/285 (53.33%), Query Frame = 1 Query: 31 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS----EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNR 834 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + S + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR + A +DI Y VN IAFHP++GT AT G DG + WD + R Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHRSNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: RAE1L_HUMAN (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.239e-40 Identity = 109/285 (38.25%), Postives = 152/285 (53.33%), Query Frame = 1 Query: 31 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS----EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNR 834 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + S + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR + A +DI Y VN IAFHP++GT AT G DG + WD + R Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHRSNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: RAEL1_PIG (mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.759e-40 Identity = 108/285 (37.89%), Postives = 152/285 (53.33%), Query Frame = 1 Query: 31 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS----EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNR 834 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + + + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR + A +DI Y VN IAFHP++GT AT G DG + WD + R Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHRSNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: RAE1L_RAT (mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.759e-40 Identity = 108/285 (37.89%), Postives = 152/285 (53.33%), Query Frame = 1 Query: 31 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS----EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNR 834 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + + + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR + A +DI Y VN IAFHP++GT AT G DG + WD + R Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHRSNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: RAE1L_MOUSE (mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.759e-40 Identity = 108/285 (37.89%), Postives = 152/285 (53.33%), Query Frame = 1 Query: 31 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS----EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNR 834 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + + + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR + A +DI Y VN IAFHP++GT AT G DG + WD + R Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHRSNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: RAE1L_BOVIN (mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 3.604e-40 Identity = 107/285 (37.54%), Postives = 152/285 (53.33%), Query Frame = 1 Query: 31 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS----EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNR 834 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + + + + +HDAPV+ + + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCHR + A +DI Y VN IAFHP++GT AT G DG + WD + R Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTVHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHRSNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: NPP17_CAEEL (Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.955e-34 Identity = 95/274 (34.67%), Postives = 143/274 (52.19%), Query Frame = 1 Query: 61 PSDGISNLRFS---NHSDHLLVSSWDKSVRLYDAS-ANVLRGEFMHG--GPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY-----PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA--GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNR 834 P D I ++FS L SWD ++R++ + AN G+ P+LD + +DSS F A AD R + + ++G HD PV+ + ++TGS+DK+L+ WD + Q T + PERVY+ ++ VVA A +H+ VY+L N + ES LK+Q RC+ + N G+AL S+EGRVA+++ D+ A+ + FKCHR +E G +Y VN I FHP +GT T G DG ++WD + R Sbjct: 41 PEDTIQVIKFSPTPQDKPMLACGSWDGTIRVWMFNDANTFEGKAQQNIPAPILDIAWIEDSSKIFIACADKEARLWDLASNQVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWDMKNLPNQ--TQMAQIQLPERVYAADVLYPMAVVALANKHIKVYNLENGPTEVKDIESQLKFQIRCISIFKDKSNQNPAGFALGSIEGRVAVQYVDV--ANPKDNFTFKCHRSAELVNGFQEIYAVNDICFHPQHGTLVTIGSDGRYSMWDKDAR 310
BLAST of FC878701 vs. ExPASy Swiss-Prot
Match: BUB3_YEAST (Cell cycle arrest protein BUB3 OS=Saccharomyces cerevisiae GN=BUB3 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.860e-20 Identity = 78/280 (27.86%), Postives = 128/280 (45.71%), Query Frame = 1 Query: 46 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQR-RESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNRR 837 ++ P D IS+++ LL++SWD S+ +Y + NV L + P+L C F D D + + + + L+ S + + C Y ++I SWD ++ DPR G + +++++ +RL+V V + L ES LKYQ R V P GYA SS++GRVA+EFFD + + +K++AF+CHR + ++ YPVN+I F P + T G DG ++ W+ R+ Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 The following BLAST results are available for this feature:
BLAST of FC878701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878701 ID=FC878701; Name=FC878701; organism=Citrus clementina; type=EST; length=930bpback to top |