FC878702

Overview
NameFC878702
Unique NameFC878702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13586 contig Ccv1_Contig13586:1202..2112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_CULQU (Eukaryotic translation initiation factor 3 subunit D OS=Culex quinquefasciatus GN=eIF3-S7 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.499e-48
Identity = 92/160 (57.50%), Postives = 120/160 (75.00%), Query Frame = 3
Query:   12 LVARCEVQSVV-DVNNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            LVARCE  +V+        FLT+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NN+ KLAKWT Q+LLA +D +K GYVSR H RD   HVIL    +KP +FA QINLS  N WGI++ I+D+CMK  +GKY+++KDP+KP +R+Y++P   FE+D
Sbjct:  376 LVARCEHDAVLLTPQGDTQFLTIKALNEWDSKVANGVEWRQKLDTQRGAVLANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRAHVRDSSRHVILGTQQFKPHEFANQINLSMDNAWGILRCIIDICMKQKDGKYLIMKDPNKPMIRLYDIPDHTFESD 535          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_ANOGA (Eukaryotic translation initiation factor 3 subunit D OS=Anopheles gambiae GN=eIF3-S7 PE=3 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 4.569e-48
Identity = 90/160 (56.25%), Postives = 122/160 (76.25%), Query Frame = 3
Query:   12 LVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            LVARCE  +V+ +      FLT+ ALNE+DSK +  V+WRQKL+TQRGA+LA EL+NN+ KLAKWT Q+LLA +D +K GYVSR H RD   HVIL    +KP++FA QINLS  N WGI++ I+D+CMK  +GKY+++KDP+KP VR+Y++P + F++D
Sbjct:  377 LVARCEHDAVLKMPQGDTQFLTIKALNEWDSKIANAVEWRQKLDTQRGAILANELRNNSCKLAKWTVQALLAGSDQLKFGYVSRAHVRDSSKHVILGTQQFKPQEFANQINLSMDNAWGILRCIIDICMKQKDGKYLIMKDPNKPMVRLYDIPDNTFDSD 536          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D2_DROER (Eukaryotic translation initiation factor 3 subunit D-2 OS=Drosophila erecta GN=eIF3-S7-2 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.569e-48
Identity = 87/163 (53.37%), Postives = 129/163 (79.14%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            ++ L+ARC+   V+   N +  FL++ ALNE+DSK S  V+WRQKL+TQRGAVLA+EL+NNA KLA+WT +++LA +D +KLGYVSRV+PRDH  HVIL    +KP++FATQINL+  N WG+++ ++D+ MK  +GKY+++KDP+K  +R+Y++P +AF++D
Sbjct:  372 EVVLIARCKHNGVIQGPNGEMQFLSIKALNEWDSKGSNSVEWRQKLDTQRGAVLASELRNNACKLARWTVEAVLAGSDQLKLGYVSRVNPRDHLRHVILGTQQFKPQEFATQINLNMDNAWGVLRCLIDIVMKQPDGKYLIMKDPNKSMIRLYDIPENAFDSD 534          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D2_DROYA (Eukaryotic translation initiation factor 3 subunit D-2 OS=Drosophila yakuba GN=eIF3-S7-2 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.794e-48
Identity = 87/163 (53.37%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            ++ L+ARC+   VV   N    FL++ ALNE+DSK +  V+WRQKL+TQRGAVLA+EL+NNA KLA+WT +++LA +D +KLGYVSRV+PRDH  HVIL    +KP++FATQINL+  N WG+++ ++D+ MK  +GKY+++KDP+K  +R+Y++P +AF++D
Sbjct:  372 EVVLIARCKHNGVVQGPNGDMQFLSIKALNEWDSKVTNSVEWRQKLDTQRGAVLASELRNNACKLARWTVEAVLAGSDQLKLGYVSRVNPRDHLRHVILGTQQFKPQEFATQINLNMDNAWGVLRCLIDIVMKQPDGKYLIMKDPNKSMIRLYDIPENAFDSD 534          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D2_DROWI (Eukaryotic translation initiation factor 3 subunit D-2 OS=Drosophila willistoni GN=eIF3-S7-2 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.794e-48
Identity = 90/163 (55.21%), Postives = 125/163 (76.69%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARC+   V  + N    FL++ ALNE+DSK +  ++WRQKL++QRGAVL+TEL+NNA KLAKWT +S+LA +D +KLGYVSRV PRDH  HVIL    +KP++FATQINL+  N WGI++ ++D+     +GKY+++KDP+KP VRIY +P +AF++D
Sbjct:  369 DITLVARCKHNGVTQLPNGDMQFLSIRALNEWDSKAANSIEWRQKLDSQRGAVLSTELRNNACKLAKWTVESVLAGSDQLKLGYVSRVSPRDHLRHVILGTQQFKPQEFATQINLNMDNCWGILRCLIDIIRMQPDGKYLIMKDPNKPMVRIYHIPENAFDSD 531          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_BOMMO (Eukaryotic translation initiation factor 3 subunit D OS=Bombyx mori GN=eIF3-S7 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.018e-47
Identity = 90/160 (56.25%), Postives = 122/160 (76.25%), Query Frame = 3
Query:   12 LVARCEVQSVVD-VNNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            L+ARCE  +V+     +  FLT+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NN+ KLAKWT Q+LLA +D +K GYVSR   RD+  HVIL    +KP +FA QINLS  N WGI++ I+D+CMK  +GKY+++KDP+KP +R+Y++P + FE+D
Sbjct:  364 LIARCEHDAVMQGPQGETQFLTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRAQVRDNSRHVILGTQQFKPHEFAAQINLSMDNAWGILRCIIDICMKQKDGKYLIMKDPNKPLIRLYDIPDNTFESD 523          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D2_DROPE (Eukaryotic translation initiation factor 3 subunit D-2 OS=Drosophila persimilis GN=eIF3-S7-2 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.962e-47
Identity = 90/162 (55.56%), Postives = 127/162 (78.40%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEN 482
            ++ L+ARC+   V+   N +  FL++ ALNE+DSK S  ++WRQKL+TQ GAVLA+EL+NNA KLA+WT +S+L+ +D +KLGYVSRV PRDH  HVIL    +KP++F+TQINLS  N WGI++ ++D+ MK  +GKY+L+KDP+KP VR+Y+VP +AFE+
Sbjct:  368 NIILIARCKHNGVLQGPNGEVQFLSIRALNEWDSKASNSLEWRQKLDTQHGAVLASELRNNACKLARWTVESVLSGSDQLKLGYVSRVIPRDHLRHVILRTQQFKPQEFSTQINLSMDNAWGILRCLIDIVMKQPDGKYLLMKDPNKPMVRLYDVPENAFES 529          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_XENLA (Eukaryotic translation initiation factor 3 subunit D OS=Xenopus laevis GN=eif3d PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.598e-47
Identity = 89/163 (54.60%), Postives = 122/163 (74.85%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKY-SGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LV RCE   V+   N + SF+ +  LNE+DSKY +GVDWRQKL++QRGAV+ATELKNN+ KLA+WT  +LLA ++ +KLGYVSR + +D   HV+L    +KP +FA QINLS  N WGI++ +VD+CMKL+EGKY+++KDP+K  +RIY +P   F +D
Sbjct:  371 DIDLVVRCEHDGVMTGANGEVSFINIKTLNEWDSKYCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYNVKDSTRHVVLGTQQFKPNEFANQINLSMENAWGILRCVVDICMKLDEGKYLILKDPNKQVIRIYSLPDGTFSSD 533          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_MAGGR (Eukaryotic translation initiation factor 3 subunit D OS=Magnaporthe grisea GN=MGG_00341 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.598e-47
Identity = 92/166 (55.42%), Postives = 125/166 (75.30%), Query Frame = 3
Query:    6 MYLVARCEVQSVVDVNN--QRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            +YLV R E+ +V   +N  +  FLT+ ALNEFD+K  G    +DWR KL +QRGAV+ATE+KNN+ KLAKWT QS+LA AD++KLG+VSR +P+ +  HVIL V+G+KPKDFA Q+NL  +N WGIV++I D+C+K  +GKYVLVKDP+K  +R+YEVP    + +
Sbjct:  394 VYLVVRTELDAVQKNSNNGEDQFLTVRALNEFDNKAQGSGGALDWRSKLVSQRGAVVATEMKNNSCKLAKWTVQSILAKADVLKLGFVSRANPKSNDKHVILGVIGWKPKDFANQMNLHLSNGWGIVRTIADMCLKREDGKYVLVKDPNKTILRLYEVPAGGLDEE 559          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D2_DROGR (Eukaryotic translation initiation factor 3 subunit D-2 OS=Drosophila grimshawi GN=eIF3-S7-2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.598e-47
Identity = 86/163 (52.76%), Postives = 130/163 (79.75%), Query Frame = 3
Query:    3 DMYLVARCEVQSVV-DVNNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            DM LVARC+   V+     +  FL++ ALNE+DSK +  V+WRQKL++QRGAVLA+EL+NNA KLAKWT +++LA +D +KLGYVSR++ +DH +HVIL +  +KP++FATQINL+  N WG+++ +VD+ +K  +GKY+++KDP+KP +R+Y++P +AF++D
Sbjct:  374 DMVLVARCKHNGVLRSPGGELQFLSIRALNEWDSKAANSVEWRQKLDSQRGAVLASELRNNACKLAKWTVEAVLAGSDQLKLGYVSRLNRKDHLHHVILGMQQFKPQEFATQINLNMDNAWGVLRCLVDIMLKQPDGKYLIMKDPNKPMIRLYDIPENAFDSD 536          
The following BLAST results are available for this feature:
BLAST of FC878702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EIF3D_CULQU3.499e-4857.50Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_ANOGA4.569e-4856.25Eukaryotic translation initiation factor 3 subunit... [more]
EI3D2_DROER4.569e-4853.37Eukaryotic translation initiation factor 3 subunit... [more]
EI3D2_DROYA7.794e-4853.37Eukaryotic translation initiation factor 3 subunit... [more]
EI3D2_DROWI7.794e-4855.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_BOMMO1.018e-4756.25Eukaryotic translation initiation factor 3 subunit... [more]
EI3D2_DROPE2.962e-4755.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_XENLA6.598e-4754.60Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_MAGGR6.598e-4755.42Eukaryotic translation initiation factor 3 subunit... [more]
EI3D2_DROGR6.598e-4752.76Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878702 ID=FC878702; Name=FC878702; organism=Citrus clementina; type=EST; length=911bp
ATGATATGTATCTTGTTGCGAGGTGTGAGGTGCAGAGTGTTGTGGATGTT
AATAATCAGAGGTCGTTTTTGACGTTAAATGCTCTTAATGAGTTCGATTC
CAAGTACTCTGGTGTTGATTGGAGGCAGAAGTTGGAGACTCAAAGGGGTG
CGGTTTTAGCCACTGAGTTGAAGAACAATGCTAATAAGTTGGCAAAATGG
ACTGCACAATCGTTGTTGGCGAGTGCTGATTTGATGAAATTGGGATATGT
TTCAAGGGTTCATCCACGTGATCATTTTAACCATGTGATATTGGCTGTGA
TGGGGTATAAGCCAAAGGATTTTGCCACCCAGATTAACTTGAGTACTGCA
AATATGTGGGGAATTGTGAAGAGTATTGTGGATTTGTGCATGAAGTTGAA
TGAGGGGAAGTATGTGCTTGTGAAGGATCCATCTAAGCCGCAAGTGAGGA
TCTATGAGGTTCCCCCAGATGCATTTGAGAATGATTATGTGGAGGAGCCT
TTGCCAGAGGAGGAGCAGGTTCAGCCACCTACTGAGAATGCTGAAGGAGT
GGAGGCAAATGGAGCTGCAAATGATTTGGATGATGTTGTTGTTGATGCTC
AAGCTTGATGGTCGAAGTCTTTTTTTTTCTAAAAACAGATACCTGCCAGT
GAGTGGTTTGCATCATGACAGTAGCAGACTAACAAGCTGAAAGGATTCTG
GCCCTTTTTGACCTGATGTTTTTGATGTTGTAAGTCAAGCAGCAGAATAC
TTCAATTATGATAGTGTATGGTGCCCTTTGGAGATCAGTGGTTATAATTA
GTTGCCATGACTTTTGTTGCTATGGATAATGGAACCTTGTCTACAATGGT
TTTCAAGGTTTGATGATTATTTTTTTTCCTTGTTTTGAATTTTAATTATG
ATGGATTATCT
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