FC878702

Overview
NameFC878702
Unique NameFC878702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13586 contig Ccv1_Contig13586:1202..2112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_XENTR (Eukaryotic translation initiation factor 3 subunit D OS=Xenopus tropicalis GN=eif3d PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.617e-47
Identity = 88/163 (53.99%), Postives = 121/163 (74.23%), Query Frame = 3
Query:    3 DMYLVARCEVQS-VVDVNNQRSFLTLNALNEFDSKY-SGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LV RCE    +   N + SF+ +  LNE+DS+Y +GVDWRQKL++QRGAV+ATELKNN+ KLA+WT  +LLA ++ +KLGYVSR H +D   HV+L    +KP +FA QINLS  N WGI++ +VD+CMKL+EGKY+++KDP+K  +RIY +P   F +D
Sbjct:  371 DIDLVVRCEHDGFMTGANGEVSFVNIKTLNEWDSRYCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRCHVKDSTRHVVLGTQQFKPNEFANQINLSMENAWGILRCVVDICMKLDEGKYLILKDPNKQVIRIYSLPDGTFSSD 533          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_PONAB (Eukaryotic translation initiation factor 3 subunit D OS=Pongo abelii GN=EIF3D PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.125e-46
Identity = 86/163 (52.76%), Postives = 122/163 (74.85%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKY-SGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ L+ RCE   V+   N + SF+ +  LNE+DS++ +GVDWRQKL++QRGAV+ATELKNN+ KLA+WT  +LLA ++ +KLGYVSR H +D   HVIL    +KP +FA+QINLS  N WGI++ ++D+CMKL EGKY+++KDP+K  +R+Y +P   F +D
Sbjct:  368 DIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSD 530          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_HUMAN (Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.125e-46
Identity = 86/163 (52.76%), Postives = 122/163 (74.85%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKY-SGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ L+ RCE   V+   N + SF+ +  LNE+DS++ +GVDWRQKL++QRGAV+ATELKNN+ KLA+WT  +LLA ++ +KLGYVSR H +D   HVIL    +KP +FA+QINLS  N WGI++ ++D+CMKL EGKY+++KDP+K  +R+Y +P   F +D
Sbjct:  368 DIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSD 530          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_BOVIN (Eukaryotic translation initiation factor 3 subunit D OS=Bos taurus GN=EIF3D PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.125e-46
Identity = 86/163 (52.76%), Postives = 122/163 (74.85%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKY-SGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ L+ RCE   V+   N + SF+ +  LNE+DS++ +GVDWRQKL++QRGAV+ATELKNN+ KLA+WT  +LLA ++ +KLGYVSR H +D   HVIL    +KP +FA+QINLS  N WGI++ ++D+CMKL EGKY+++KDP+K  +R+Y +P   F +D
Sbjct:  368 DIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSD 530          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D2_DROVI (Eukaryotic translation initiation factor 3 subunit D-2 OS=Drosophila virilis GN=eIF3-S7-2 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.470e-46
Identity = 85/163 (52.15%), Postives = 129/163 (79.14%), Query Frame = 3
Query:    3 DMYLVARCEVQSVV-DVNNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ L+ARC+   V+     +  FL++ ALNE+DSK +  V+WRQKL++QRGAVLA+EL+NNA KLAKWT +++LA +D +KLGYVSRV+ +DH  HVIL +  +KP++FATQINL+  N WG+++ +VD+ +K  +GKY+++KDP+KP +R+Y++P +AF++D
Sbjct:  373 DVVLIARCKHNGVIKSPAGELQFLSIKALNEWDSKAANSVEWRQKLDSQRGAVLASELRNNACKLAKWTVEAVLAGSDQLKLGYVSRVNRKDHLRHVILGMQQFKPQEFATQINLNMDNAWGVLRCLVDIVLKQPDGKYLIMKDPNKPMIRLYDIPDNAFDSD 535          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D2_DROPS (Eukaryotic translation initiation factor 3 subunit D-2 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S7-2 PE=3 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.470e-46
Identity = 89/162 (54.94%), Postives = 126/162 (77.78%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEN 482
            ++ L+ARC+   V+   N +  FL++ ALNE+DSK S  ++WRQKL+TQ GAVLA+EL+NNA KLA+WT +S+L+ +D +KLGYVSRV  RDH  HVIL    +KP++F+TQINLS  N WGI++ ++D+ MK  +GKY+L+KDP+KP VR+Y+VP +AFE+
Sbjct:  368 NIILIARCKHNGVLQGPNGEVQFLSIRALNEWDSKASNSLEWRQKLDTQHGAVLASELRNNACKLARWTVESVLSGSDQLKLGYVSRVSTRDHLRHVILRTQQFKPQEFSTQINLSMDNAWGILRCLIDIVMKQPDGKYLLMKDPNKPMVRLYDVPENAFES 529          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_CHAGB (Eukaryotic translation initiation factor 3 subunit D OS=Chaetomium globosum GN=CHGG_05977 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.920e-46
Identity = 92/165 (55.76%), Postives = 125/165 (75.76%), Query Frame = 3
Query:    9 YLVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            YLV R E+ +V     + +  F+T++ALNEFDSK  G    +DWR KL +QRGAV+ATE+KNN+ KLA+WT QS+LA AD+MKLG+VSRV P+ +  HVIL  +G+KPKDFA Q+NL  +N WGIV++I D+C++  EGKYVLVKDP+K  +R+YEVP +  ++D
Sbjct:  406 YLVVRTELDAVQKNPTSGEDQFVTVHALNEFDSKAQGSGGALDWRTKLVSQRGAVVATEMKNNSCKLARWTVQSILAKADVMKLGFVSRVTPKANDKHVILGCVGWKPKDFANQMNLQLSNGWGIVRTIADMCLQREEGKYVLVKDPNKNILRLYEVPANGLDDD 570          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D2_DROMO (Eukaryotic translation initiation factor 3 subunit D-2 OS=Drosophila mojavensis GN=eIF3-S7-2 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.507e-46
Identity = 84/163 (51.53%), Postives = 129/163 (79.14%), Query Frame = 3
Query:    3 DMYLVARCEVQSVV-DVNNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ L+ARC+   V+   + +  F+++ ALNE+DSK +  V+WRQKL++QRGAVLA+EL+NNA KLAKWT +++LA +D +KLGYVSRV+  DH  HVIL +  +KP++FATQINL+  N WG+++ +VD+ +K  +GKY+++KDP+KP +R+Y++P +AF++D
Sbjct:  373 DVVLIARCKHNGVIKSPSGELQFVSIKALNEWDSKAANSVEWRQKLDSQRGAVLASELRNNACKLAKWTVEAVLAGSDQLKLGYVSRVNRNDHLRHVILGLQQFKPQEFATQINLNMDNAWGVLRCLVDIVLKQPDGKYLIMKDPNKPMIRLYDIPENAFDSD 535          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_RAT (Eukaryotic translation initiation factor 3 subunit D OS=Rattus norvegicus GN=Eif3d PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.275e-46
Identity = 85/163 (52.15%), Postives = 122/163 (74.85%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKY-SGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ L+ RCE   V+   N + SF+ +  LNE+DS++ +GVDWRQKL++QRGAV+ATELKNN+ KLA+WT  +LLA ++ +KLGYVSR H +D   HVIL    +KP +FA+QINLS  N WGI++ ++D+CMKL EGKY+++KDP+K  +R+Y +P   F ++
Sbjct:  368 DIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSE 530          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_MOUSE (Eukaryotic translation initiation factor 3 subunit D OS=Mus musculus GN=Eif3d PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 3.275e-46
Identity = 85/163 (52.15%), Postives = 122/163 (74.85%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKY-SGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ L+ RCE   V+   N + SF+ +  LNE+DS++ +GVDWRQKL++QRGAV+ATELKNN+ KLA+WT  +LLA ++ +KLGYVSR H +D   HVIL    +KP +FA+QINLS  N WGI++ ++D+CMKL EGKY+++KDP+K  +R+Y +P   F ++
Sbjct:  368 DIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSE 530          
The following BLAST results are available for this feature:
BLAST of FC878702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EIF3D_XENTR8.617e-4753.99Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_PONAB1.125e-4652.76Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_HUMAN1.125e-4652.76Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_BOVIN1.125e-4652.76Eukaryotic translation initiation factor 3 subunit... [more]
EI3D2_DROVI1.470e-4652.15Eukaryotic translation initiation factor 3 subunit... [more]
EI3D2_DROPS1.470e-4654.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_CHAGB1.920e-4655.76Eukaryotic translation initiation factor 3 subunit... [more]
EI3D2_DROMO2.507e-4651.53Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_RAT3.275e-4652.15Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_MOUSE3.275e-4652.15Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878702 ID=FC878702; Name=FC878702; organism=Citrus clementina; type=EST; length=911bp
ATGATATGTATCTTGTTGCGAGGTGTGAGGTGCAGAGTGTTGTGGATGTT
AATAATCAGAGGTCGTTTTTGACGTTAAATGCTCTTAATGAGTTCGATTC
CAAGTACTCTGGTGTTGATTGGAGGCAGAAGTTGGAGACTCAAAGGGGTG
CGGTTTTAGCCACTGAGTTGAAGAACAATGCTAATAAGTTGGCAAAATGG
ACTGCACAATCGTTGTTGGCGAGTGCTGATTTGATGAAATTGGGATATGT
TTCAAGGGTTCATCCACGTGATCATTTTAACCATGTGATATTGGCTGTGA
TGGGGTATAAGCCAAAGGATTTTGCCACCCAGATTAACTTGAGTACTGCA
AATATGTGGGGAATTGTGAAGAGTATTGTGGATTTGTGCATGAAGTTGAA
TGAGGGGAAGTATGTGCTTGTGAAGGATCCATCTAAGCCGCAAGTGAGGA
TCTATGAGGTTCCCCCAGATGCATTTGAGAATGATTATGTGGAGGAGCCT
TTGCCAGAGGAGGAGCAGGTTCAGCCACCTACTGAGAATGCTGAAGGAGT
GGAGGCAAATGGAGCTGCAAATGATTTGGATGATGTTGTTGTTGATGCTC
AAGCTTGATGGTCGAAGTCTTTTTTTTTCTAAAAACAGATACCTGCCAGT
GAGTGGTTTGCATCATGACAGTAGCAGACTAACAAGCTGAAAGGATTCTG
GCCCTTTTTGACCTGATGTTTTTGATGTTGTAAGTCAAGCAGCAGAATAC
TTCAATTATGATAGTGTATGGTGCCCTTTGGAGATCAGTGGTTATAATTA
GTTGCCATGACTTTTGTTGCTATGGATAATGGAACCTTGTCTACAATGGT
TTTCAAGGTTTGATGATTATTTTTTTTCCTTGTTTTGAATTTTAATTATG
ATGGATTATCT
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