FC878702

Overview
NameFC878702
Unique NameFC878702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13586 contig Ccv1_Contig13586:1202..2112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_MACFA (Eukaryotic translation initiation factor 3 subunit D OS=Macaca fascicularis GN=EIF3D PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.275e-46
Identity = 86/163 (52.76%), Postives = 121/163 (74.23%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKY-SGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ L+ RCE   V+   N   SF+ +  LNE+DS++ +GVDWRQKL++QRGAV+ATELKNN+ KLA+WT  +LLA ++ +KLGYVSR H +D   HVIL    +KP +FA+QINLS  N WGI++ ++D+CMKL EGKY+++KDP+K  +R+Y +P   F +D
Sbjct:  368 DIDLIVRCEHDGVMTGANGGVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSD 530          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_DANRE (Eukaryotic translation initiation factor 3 subunit D OS=Danio rerio GN=eif3d PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.275e-46
Identity = 85/163 (52.15%), Postives = 121/163 (74.23%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD-VNNQRSFLTLNALNEFDSKY-SGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ L+ RCE   V+   N + SF+ +  LNE+DS+Y +GVDWRQKL++QRGAVLATELKNN+ KLA+WT  ++LA ++ +KLGYVSR H +D   HV+L    +KP +FA+QINLS  N WGI++ ++D+C KL EGKY+++KDP+K  +R+Y +P   F +D
Sbjct:  371 DIDLIVRCEHDGVMTGANGEVSFINVKTLNEWDSRYCNGVDWRQKLDSQRGAVLATELKNNSYKLARWTCCAILAGSEYLKLGYVSRYHVKDSSRHVVLGTQQFKPNEFASQINLSMENAWGILRCVIDICRKLEEGKYLILKDPNKQVIRVYSLPDGTFSSD 533          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_PHANO (Eukaryotic translation initiation factor 3 subunit D OS=Phaeosphaeria nodorum GN=SNOG_04247 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.123e-45
Identity = 88/166 (53.01%), Postives = 128/166 (77.11%), Query Frame = 3
Query:    6 MYLVARCEVQSVV--DVNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            ++L+ R E+ +VV  ++N +  +LT+ ALNEFD+K  G    +DWR KL +QRGAVLATE+KNN+ KLA+W  QS+LA AD MKLG+VSR +P+++ +HVIL V+  KP+DFA+Q+ L+  N WGIV++IVD+ ++++EGKYVLVKDP+K  +R+Y+VP   FE +
Sbjct:  396 LHLIVRTELDAVVKNNINGEDQYLTIKALNEFDNKAQGSGGALDWRSKLASQRGAVLATEMKNNSCKLARWAVQSILAKADTMKLGFVSRTNPKNNNDHVILGVLTNKPRDFASQMALNLNNGWGIVRTIVDMVLRMDEGKYVLVKDPNKSLLRLYQVPLHTFEEE 561          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_SCHPO (Eukaryotic translation initiation factor 3 subunit D OS=Schizosaccharomyces pombe GN=moe1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.918e-44
Identity = 86/161 (53.42%), Postives = 120/161 (74.53%), Query Frame = 3
Query:   12 LVARCEVQSVV-DVNNQRSFLTLNALNEFDSKYSGV----DWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFE 479
            L+ R EV   V +  N   ++++ ALNE+D K++ V    DWR KLE+QRGAV ATE+KNN+ KLA+WT ++LLA  D MK+G+VSR + RD  +H IL V+ YKP D A+Q+NLS +N WGIV++I D+C+K+ +GKYVLVKDP++P +R+Y VPP+ FE
Sbjct:  394 LMVRTEVDGYVKNPANDVQYISIKALNEYDPKFTNVTGSVDWRSKLESQRGAVFATEMKNNSCKLARWTVEALLAGVDSMKVGFVSRSNARDAQHHGILGVVAYKPADLASQMNLSLSNGWGIVRTIADVCLKMPDGKYVLVKDPNRPILRLYSVPPNTFE 554          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_NEMVE (Eukaryotic translation initiation factor 3 subunit D OS=Nematostella vectensis GN=v1g235689 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.389e-43
Identity = 82/159 (51.57%), Postives = 115/159 (72.33%), Query Frame = 3
Query:   12 LVARCEVQSVVD-VNNQRSFLTLNALNEFDSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            L+ RCE  +++     +   + +  LNE+D K +GVDWRQKL++QRGAVLATELKNN+ KLAKWTA S+LA ++ +KLGYVSRV+  D   H IL    ++P++FATQI L+  N WG+++ I+D+CMK  EGK +++KDPSK  +RIY++P   FE D
Sbjct:  378 LIVRCEHDAIMQGPRGETCLVNIKTLNEWDPKMTGVDWRQKLDSQRGAVLATELKNNSCKLAKWTANSILAGSEYLKLGYVSRVNFLDTSKHTILGTQQFRPREFATQIALNMDNAWGVLRCIIDICMKQPEGKLLILKDPSKGVIRIYDIPNSTFETD 536          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_NEUCR (Eukaryotic translation initiation factor 3 subunit D OS=Neurospora crassa GN=NCU07380 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.860e-43
Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 3
Query:    9 YLVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMK--LNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            +LV R E+ +V     + +   +T++ALNE+DSK  G    +DWR KL +QRGAV+ATE+KNN+ KLA+WT QS+LA AD+MKLG+VSRV+P+ +  HVIL V+G+KPKDFA Q+NL  +N WGIV++I D+C+K    + K+VLVKDP+K  +R+YEVP  + + +
Sbjct:  409 FLVVRTEIDAVQKNATDGKNQLVTVHALNEWDSKAQGAGGALDWRTKLASQRGAVVATEMKNNSCKLARWTVQSILAKADVMKLGFVSRVNPKVNDKHVILGVVGWKPKDFANQMNLQLSNGWGIVRTIADMCLKSESEDAKFVLVKDPNKNILRLYEVPAGSLDEE 575          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_ASPFU (Eukaryotic translation initiation factor 3 subunit D OS=Aspergillus fumigatus GN=AFUA_2G14670 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.288e-42
Identity = 89/171 (52.05%), Postives = 120/171 (70.18%), Query Frame = 3
Query:   12 LVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNE-------GKYVLVKDPSKPQVRIYEVPPDAFEND 485
            ++ R EV +V+   V  +   L + ALNEFDSK  G    +DWR KL +QRGAV+ATE+KNN+ KLA+WT Q++LA AD MKLG+VSR +PR   +HVIL V+GYKP++FA Q+NL+  N WGIV++IVD    L+         KYVL+KDP++P +R+Y VPP+ FE D
Sbjct:  398 MIVRTEVDAVMKNPVGGEDQHLIVKALNEFDSKAPGSGGALDWRSKLWSQRGAVVATEMKNNSIKLARWTTQAILAKADAMKLGFVSRANPRSATSHVILGVVGYKPREFAAQMNLNLGNGWGIVRTIVDRIRALDAEEEEDKVKKYVLIKDPNRPVIRLYSVPPNTFEED 568          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_ASPFC (Eukaryotic translation initiation factor 3 subunit D OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_030310 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.288e-42
Identity = 89/171 (52.05%), Postives = 120/171 (70.18%), Query Frame = 3
Query:   12 LVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNE-------GKYVLVKDPSKPQVRIYEVPPDAFEND 485
            ++ R EV +V+   V  +   L + ALNEFDSK  G    +DWR KL +QRGAV+ATE+KNN+ KLA+WT Q++LA AD MKLG+VSR +PR   +HVIL V+GYKP++FA Q+NL+  N WGIV++IVD    L+         KYVL+KDP++P +R+Y VPP+ FE D
Sbjct:  398 MIVRTEVDAVMKNPVGGEDQHLIVKALNEFDSKAPGSGGALDWRSKLWSQRGAVVATEMKNNSIKLARWTTQAILAKADAMKLGFVSRANPRSATSHVILGVVGYKPREFAAQMNLNLGNGWGIVRTIVDRIRALDAEEEEDKVKKYVLIKDPNRPVIRLYSVPPNTFEED 568          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_NEOFI (Eukaryotic translation initiation factor 3 subunit D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_089900 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.196e-42
Identity = 88/171 (51.46%), Postives = 120/171 (70.18%), Query Frame = 3
Query:   12 LVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNE-------GKYVLVKDPSKPQVRIYEVPPDAFEND 485
            ++ R EV +V+   V  +   L + ALNEFDSK  G    +DWR KL +QRGAV+ATE+KNN+ KLA+WT Q++LA AD MKLG++SR +PR   +HVIL V+GYKP++FA Q+NL+  N WGIV++IVD    L+         KYVL+KDP++P +R+Y VPP+ FE D
Sbjct:  398 MIVRTEVDAVMKNPVGGEDQQLIVKALNEFDSKAPGSGGALDWRSKLWSQRGAVVATEMKNNSIKLARWTTQAILAKADAMKLGFISRANPRSATSHVILGVVGYKPREFAAQMNLNLGNGWGIVRTIVDRIRSLDAEEEEDKVKKYVLIKDPNRPVIRLYSVPPNTFEED 568          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_EMENI (Eukaryotic translation initiation factor 3 subunit D OS=Emericella nidulans GN=AN7540 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.347e-42
Identity = 89/171 (52.05%), Postives = 119/171 (69.59%), Query Frame = 3
Query:   12 LVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEG-------KYVLVKDPSKPQVRIYEVPPDAFEND 485
            ++ R EV ++V   VN +   L + ALNEFDSK  G    +DWR KL +QRGAV+ATE+KNN+ KLA+WT Q++LA AD MKLG+VSR +PR    HV+L V GYKP++FA Q+NL+  N WGIV++IVD    L+         KY+LVKDP++P +R+Y VP +AFE D
Sbjct:  399 MIVRTEVDALVKNPVNGEDQQLVVKALNEFDSKAQGSGGSLDWRSKLYSQRGAVVATEMKNNSCKLARWTTQAILAKADGMKLGFVSRANPRSAAAHVVLGVAGYKPREFAAQMNLNLGNGWGIVRTIVDRIRALDADEEEDKVTKYILVKDPNRPVLRLYSVPANAFEED 569          
The following BLAST results are available for this feature:
BLAST of FC878702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EIF3D_MACFA3.275e-4652.76Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_DANRE3.275e-4652.15Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_PHANO2.123e-4553.01Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_SCHPO8.918e-4453.42Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_NEMVE3.389e-4351.57Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_NEUCR9.860e-4352.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_ASPFU1.288e-4252.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_ASPFC1.288e-4252.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_NEOFI2.196e-4251.46Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_EMENI8.347e-4252.05Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878702 ID=FC878702; Name=FC878702; organism=Citrus clementina; type=EST; length=911bp
ATGATATGTATCTTGTTGCGAGGTGTGAGGTGCAGAGTGTTGTGGATGTT
AATAATCAGAGGTCGTTTTTGACGTTAAATGCTCTTAATGAGTTCGATTC
CAAGTACTCTGGTGTTGATTGGAGGCAGAAGTTGGAGACTCAAAGGGGTG
CGGTTTTAGCCACTGAGTTGAAGAACAATGCTAATAAGTTGGCAAAATGG
ACTGCACAATCGTTGTTGGCGAGTGCTGATTTGATGAAATTGGGATATGT
TTCAAGGGTTCATCCACGTGATCATTTTAACCATGTGATATTGGCTGTGA
TGGGGTATAAGCCAAAGGATTTTGCCACCCAGATTAACTTGAGTACTGCA
AATATGTGGGGAATTGTGAAGAGTATTGTGGATTTGTGCATGAAGTTGAA
TGAGGGGAAGTATGTGCTTGTGAAGGATCCATCTAAGCCGCAAGTGAGGA
TCTATGAGGTTCCCCCAGATGCATTTGAGAATGATTATGTGGAGGAGCCT
TTGCCAGAGGAGGAGCAGGTTCAGCCACCTACTGAGAATGCTGAAGGAGT
GGAGGCAAATGGAGCTGCAAATGATTTGGATGATGTTGTTGTTGATGCTC
AAGCTTGATGGTCGAAGTCTTTTTTTTTCTAAAAACAGATACCTGCCAGT
GAGTGGTTTGCATCATGACAGTAGCAGACTAACAAGCTGAAAGGATTCTG
GCCCTTTTTGACCTGATGTTTTTGATGTTGTAAGTCAAGCAGCAGAATAC
TTCAATTATGATAGTGTATGGTGCCCTTTGGAGATCAGTGGTTATAATTA
GTTGCCATGACTTTTGTTGCTATGGATAATGGAACCTTGTCTACAATGGT
TTTCAAGGTTTGATGATTATTTTTTTTCCTTGTTTTGAATTTTAATTATG
ATGGATTATCT
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