FC878702

Overview
NameFC878702
Unique NameFC878702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13586 contig Ccv1_Contig13586:1202..2112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_ASPOR (Eukaryotic translation initiation factor 3 subunit D OS=Aspergillus oryzae GN=AO090026000811 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.066e-41
Identity = 88/171 (51.46%), Postives = 118/171 (69.01%), Query Frame = 3
Query:   12 LVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNE-------GKYVLVKDPSKPQVRIYEVPPDAFEND 485
            +V R EV +++   VN +   L + ALNEFDSK  G    +DWR KL +QRGAV+ATE+KNN+ KLA+WT Q++LA AD MKLG+VSR +PR    HV+L V+GYKP+D A Q+NL+  N WGIV++IVD    L+         KYVL+KDP++P +R+Y VP + FE D
Sbjct:  396 MVVRTEVDALLKNPVNGEDQQLIVKALNEFDSKAQGSGNALDWRSKLWSQRGAVVATEMKNNSLKLARWTTQAVLAKADGMKLGFVSRANPRSAAGHVVLGVVGYKPRDLAAQMNLNLGNGWGIVRTIVDRIRALDAEEDEEKVKKYVLIKDPNRPVLRLYSVPANTFEED 566          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_ASPNC (Eukaryotic translation initiation factor 3 subunit D OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An15g03780 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.574e-40
Identity = 86/171 (50.29%), Postives = 117/171 (68.42%), Query Frame = 3
Query:   12 LVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEG-------KYVLVKDPSKPQVRIYEVPPDAFEND 485
            ++ R EV +++   VN +   L + ALNEFDSK  G    +DWR KL +QRGAV+ATE+KNN+ KLA+WT Q++LA AD MKLG+VSR +PR    HV+L V+GYKP+D A Q+NL+  N WGIV++IVD    L+         KYVL+KDP++P +R+Y VP   FE +
Sbjct:  399 MIVRTEVDAIMKNPVNGEDQQLLVKALNEFDSKAQGSGGALDWRSKLWSQRGAVVATEMKNNSVKLARWTTQAILAKADGMKLGFVSRANPRSAAGHVVLGVVGYKPRDLAAQMNLNLGNGWGIVRTIVDRIRALDADEDEDKVTKYVLIKDPNRPVLRLYSVPATTFEEE 569          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_ASPCL (Eukaryotic translation initiation factor 3 subunit D OS=Aspergillus clavatus GN=ACLA_072810 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.574e-40
Identity = 86/171 (50.29%), Postives = 116/171 (67.84%), Query Frame = 3
Query:   12 LVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEG-------KYVLVKDPSKPQVRIYEVPPDAFEND 485
            L+ R EV +V+   V+ +   L + ALNEFDSK  G    +DWR KL +QRGAV+ATE+KNN+ KLA+W  Q++LA AD MKLG+VSR +PR    HV+L V+ YKP+D A Q+NL+  N WGIV++IVD    L+         KYVL+KDP++P +R+Y VP + FE D
Sbjct:  399 LIVRTEVDAVMKNPVSGEEQQLVVKALNEFDSKAPGSGGALDWRSKLWSQRGAVVATEMKNNSIKLARWATQAILAKADAMKLGFVSRANPRSAAGHVVLGVVSYKPRDLAAQMNLNLGNGWGIVRTIVDRIQALDANEEEDKVTKYVLIKDPNRPVLRLYSVPANTFEED 569          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_COCIM (Eukaryotic translation initiation factor 3 subunit D OS=Coccidioides immitis GN=CIMG_02370 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.507e-40
Identity = 86/178 (48.31%), Postives = 123/178 (69.10%), Query Frame = 3
Query:   12 LVARCEVQSVV--DVNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLN-----EG---------KYVLVKDPSKPQVRIYEVPPDAFEND 485
            ++ R E+ +V+  +++ +   +TL ALNEFD K  G    +DWR KL +QRGAV+ATE+KNN  KLA+WT Q++LA +D+MKLG+V+R +PR    H+IL V+GYKP++FA Q+NL+ AN WGIV++I+DL   L+     EG         KY+LVKDP+K  VR+Y VP + FE +
Sbjct:  402 IIVRTEIDAVLKNNISGEDQHVTLKALNEFDHKAQGAGGALDWRSKLYSQRGAVVATEMKNNNVKLARWTTQAILAKSDVMKLGFVTRANPRSATAHMILGVIGYKPREFALQMNLNMANGWGIVRTIIDLVNSLDARDEEEGDDAQEDKIKKYILVKDPNKSVVRLYSVPANTFEEE 579          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_CRYNE (Eukaryotic translation initiation factor 3 subunit D OS=Cryptococcus neoformans GN=CNB01420 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.982e-40
Identity = 76/142 (53.52%), Postives = 105/142 (73.94%), Query Frame = 3
Query:   69 LTLNALNEFDSKYSG-----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFE 479
            +T+ ALNE+D +  G     +DWR+ L+TQ+GA+LA+E+KNN+ K A+W  QS+LA  + MK+GY+SR +PRD   H I+ V  +KP DFA Q+N+S AN WGIV++I DL +K  EGK+VLVKDP+ P VR+Y+VP D FE
Sbjct:  393 VTVKALNEYDPRVQGGSGKPLDWRKNLDTQKGAILASEMKNNSAKFARWAIQSILAGVEQMKMGYISRANPRDAQRHTIVGVQSFKPLDFARQMNVSLANGWGIVRTIADLVLKQPEGKFVLVKDPNNPLVRLYKVPDDTFE 534          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_CAEEL (Eukaryotic translation initiation factor 3 subunit D OS=Caenorhabditis elegans GN=eif-3.D PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.020e-39
Identity = 81/160 (50.62%), Postives = 110/160 (68.75%), Query Frame = 3
Query:   12 LVARCEVQSVVD-VNNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            LV R E+  V+  + N+   LT+ A NE+DS  SG VDWR KL+ Q+GAV+ATE+KNN+ K+AKWT Q+LLA +D MKLGYVSR + R   NH IL     KP +FA+ I L+  N WGI++ ++D CMK   GKY+L+KDP  P +R+Y +P   FE++
Sbjct:  398 LVCRTELDGVIHGLGNETQTLTIKAFNEWDSTQSGGVDWRTKLDVQKGAVMATEIKNNSAKVAKWTLQALLAGSDTMKLGYVSRNNARSTQNHSILLTQYVKPTEFASNIALNMDNCWGILRCVIDSCMKQKPGKYLLMKDPQSPVIRLYSLPEGTFESE 557          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_CAEBR (Eukaryotic translation initiation factor 3 subunit D OS=Caenorhabditis briggsae GN=eif-3.D PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.064e-39
Identity = 79/160 (49.38%), Postives = 110/160 (68.75%), Query Frame = 3
Query:   12 LVARCEVQSVVD-VNNQRSFLTLNALNEFDSKYSG-VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            LV R E+  V+  + N+   LT+ A NE+DS  +G VDWR KL+ Q+GAV+ATE+KNN+ K+AKWT Q+LLA +D MKLGYVSR + R   NH IL     KP +FA+ I L+  N WGI++ ++D CMK   GKY+L+KDP  P +R+Y +P   F+++
Sbjct:  402 LVCRTELDGVIHGLGNETQTLTIKAFNEWDSSQAGGVDWRTKLDVQKGAVMATEIKNNSAKVAKWTLQALLAGSDTMKLGYVSRNNARSTQNHSILNTQYVKPTEFASNIALNMDNCWGILRCVIDSCMKQKPGKYLLMKDPQSPVIRLYSLPEGTFDSE 561          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_USTMA (Eukaryotic translation initiation factor 3 subunit D OS=Ustilago maydis GN=UM01321 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.312e-38
Identity = 79/164 (48.17%), Postives = 115/164 (70.12%), Query Frame = 3
Query:   12 LVARCEVQS-VVDVNNQRSFLTLNALNEFDSKYSG----VDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPD-AFEND 485
            LV R EV +  V  + ++  +T+ +LNEFD++  G    +DWR KL++QRGAV+ATE+KNN+ KLA++  QSLLA AD MKLGY+SR +P+D   H+IL     KP++ A Q+ ++ +N WGIV+++ DL  K  +GKYVL+KDP+K  +R+Y VP +   END
Sbjct:  406 LVVRTEVDAYTVGASKEKQLITIKSLNEFDARAQGAGGALDWRLKLDSQRGAVVATEMKNNSFKLARFAVQSLLAGADSMKLGYISRANPKDTSRHMILGTSWLKPRELAAQMAVNLSNGWGIVRTVADLARKAEQGKYVLLKDPNKQTIRMYRVPANFGEEND 569          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_DICDI (Eukaryotic translation initiation factor 3 subunit D OS=Dictyostelium discoideum GN=eif3d PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.366e-34
Identity = 70/161 (43.48%), Postives = 104/161 (64.60%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVD--VNNQRSFLTLNALNEFDSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFE 479
            D+ ++AR E+  VV+        F+++ A+NE DS   G+++R+KL++QR A+LATE+KNN+ K AKW+ QS LA  +++ LG+VSR   RD+ NHVIL    Y   D   Q  +   N WGI+K I   CMKL  GKY+L +DP++  + +Y VP +AF+
Sbjct:  343 DIVVLARTEIDGVVEGLPGQPPKFISIKAINEHDSNRFGIEFRKKLDSQRAAILATEIKNNSTKFAKWSIQSTLAGCEMLNLGFVSRDSIRDNNNHVILGTQFYPVADLNKQNGVDMKNCWGILKHIAQTCMKLANGKYLLHRDPNRNVINLYSVPENAFD 503          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_YARLI (Eukaryotic translation initiation factor 3 subunit D OS=Yarrowia lipolytica GN=YALI0F14839g PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.023e-31
Identity = 67/149 (44.97%), Postives = 98/149 (65.77%), Query Frame = 3
Query:   12 LVARCEVQSVVDVNNQRSFLTLNALNEFDSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYE 458
            L+ R EV ++       + L L  LNE+ S     +W+ K  T RGA++A ELK+N NK+++WT QS+L   D MK+G+ SRV P+D+  H I+ V+  +PK FA QIN++  N WGI KS+V++    ++GKYVLVKDP+ P V+IY+
Sbjct:  386 LILRTEVDAL---GPDGTTLNLRVLNEYGSS----EWKNKFNTGRGAIIAAELKHNLNKISRWTVQSILGDVDQMKIGFASRVSPKDNTQHNIIGVVSREPKQFAEQINVNLNNGWGIFKSVVNIATAKDDGKYVLVKDPNNPAVKIYK 527          
The following BLAST results are available for this feature:
BLAST of FC878702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EIF3D_ASPOR7.066e-4151.46Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_ASPNC1.574e-4050.29Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_ASPCL1.574e-4050.29Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_COCIM3.507e-4048.31Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_CRYNE5.982e-4053.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_CAEEL1.020e-3950.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_CAEBR5.064e-3949.38Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_USTMA7.312e-3848.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_DICDI8.366e-3443.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3D_YARLI1.023e-3144.97Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878702 ID=FC878702; Name=FC878702; organism=Citrus clementina; type=EST; length=911bp
ATGATATGTATCTTGTTGCGAGGTGTGAGGTGCAGAGTGTTGTGGATGTT
AATAATCAGAGGTCGTTTTTGACGTTAAATGCTCTTAATGAGTTCGATTC
CAAGTACTCTGGTGTTGATTGGAGGCAGAAGTTGGAGACTCAAAGGGGTG
CGGTTTTAGCCACTGAGTTGAAGAACAATGCTAATAAGTTGGCAAAATGG
ACTGCACAATCGTTGTTGGCGAGTGCTGATTTGATGAAATTGGGATATGT
TTCAAGGGTTCATCCACGTGATCATTTTAACCATGTGATATTGGCTGTGA
TGGGGTATAAGCCAAAGGATTTTGCCACCCAGATTAACTTGAGTACTGCA
AATATGTGGGGAATTGTGAAGAGTATTGTGGATTTGTGCATGAAGTTGAA
TGAGGGGAAGTATGTGCTTGTGAAGGATCCATCTAAGCCGCAAGTGAGGA
TCTATGAGGTTCCCCCAGATGCATTTGAGAATGATTATGTGGAGGAGCCT
TTGCCAGAGGAGGAGCAGGTTCAGCCACCTACTGAGAATGCTGAAGGAGT
GGAGGCAAATGGAGCTGCAAATGATTTGGATGATGTTGTTGTTGATGCTC
AAGCTTGATGGTCGAAGTCTTTTTTTTTCTAAAAACAGATACCTGCCAGT
GAGTGGTTTGCATCATGACAGTAGCAGACTAACAAGCTGAAAGGATTCTG
GCCCTTTTTGACCTGATGTTTTTGATGTTGTAAGTCAAGCAGCAGAATAC
TTCAATTATGATAGTGTATGGTGCCCTTTGGAGATCAGTGGTTATAATTA
GTTGCCATGACTTTTGTTGCTATGGATAATGGAACCTTGTCTACAATGGT
TTTCAAGGTTTGATGATTATTTTTTTTCCTTGTTTTGAATTTTAATTATG
ATGGATTATCT
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