FC878712

Overview
NameFC878712
Unique NameFC878712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878712 vs. ExPASy Swiss-Prot
Match: TPC_MOUSE (Mitochondrial thiamine pyrophosphate carrier OS=Mus musculus GN=Slc25a19 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.831e-11
Identity = 61/232 (26.29%), Postives = 97/232 (41.81%), Query Frame = 1
Query:  253 THTAVVPLDLVKCRLQVDAD---------KYKNVVTGFKVSVKEEGMRGLAKGWAPTFIGYSLQGLCKFGLYEVFKVTYAGLLDEETGYTYRTAVYLAASASAEFF--------ADIALSPLEAAKVRI--QTMPGFANTLREAWPKMVKNEGYGTFYKGLAPLWGRQIPYTMMKFACFEKTVELLYKHVVPKPRADCTKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSKL 891
            T   + PLD++K R Q+  +         KY  +    K  ++EEG R   KG  P  I     G  +F  +E           E T   Y+  +Y     SA F         A + + P++  + R+  Q  P   N LREA   M K EG   FYKGL P      PY  ++F+C+ ++++  Y  ++P         + L+    +G I+  F    ++P D +  +L
Sbjct:   29 TRALISPLDVIKIRFQLQIERLCPSDPNAKYHGIFQAAKQILQEEGPRAFWKGHVPAQILSIGYGAVQFLAFE-----------ELTELLYQANLYQTHQFSAHFVCGGLSAGTATLTVHPVDVLRTRLAAQGEPKIYNNLREAIRTMYKTEGPFVFYKGLTPTVIAIFPYAGLQFSCY-RSLKRAYDWLIPPDGKQTGNLKNLLCGCGSGVISKTF----TYPLDLIKKRL 244          
BLAST of FC878712 vs. ExPASy Swiss-Prot
Match: UCPB_DICDI (Mitochondrial substrate carrier family protein ucpB OS=Dictyostelium discoideum GN=ucpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.306e-11
Identity = 48/164 (29.27%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  271 PLDLVKCRLQVDAD--KYKNVVTGFKVSVKEEGMRGLAKGWAPTFIGYSLQGLCKFGLYEVFKVTYAGLLDEETGYTYRTAVYLAASASAEFFADIALSPLEAAKVRIQTMPGFANTLR-------EAWPKMVKNEGYGTFYKGLAPLWGRQIPYTMMKFACFE 735
            P DL+K R+Q  +   KY ++ + FK  + +EG++GL KG  PT    +L    +   Y+  K     +LD          V++ +S  A   A I  SP++  K RI   P  +N +        + + K  ++EG    YKG  P W R  P+T++ F  +E
Sbjct:  123 PTDLIKVRMQASSKGVKYDSISSAFKEIIAKEGIKGLWKGVGPTTQRAALLTASQIPSYDHIKHM---ILDHGIIQVDGLQVHIVSSIFAGLIASITTSPVDLVKTRIMNQPFDSNGVGLIYKSSYDCFKKTFQSEGISGLYKGFLPNWFRIGPHTIVTFILYE 283          
The following BLAST results are available for this feature:
BLAST of FC878712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TPC_MOUSE2.831e-1126.29Mitochondrial thiamine pyrophosphate carrier OS=Mu... [more]
UCPB_DICDI6.306e-1129.27Mitochondrial substrate carrier family protein ucp... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878712 ID=FC878712; Name=FC878712; organism=Citrus clementina; type=EST; length=960bp
TGCGGTGCGGTGTGTGGTACAATTTCGAACGGATATATAGACATTAAAAT
GTTCTCATCCATGATGGAGGTGGCCCGGAACTCCCCATTCCGCGGCCCTC
TCTCTCCCGCACAGTGTGACGCCGTTACACAGCCACAGGCTTCACAGAGC
GGCATGGCGGCGGCGGCGGTGGTGCCCGCCGACTCCTGCGAGTTCGGCTC
CGCCAAATACTTCGCCCTCTGCGGACTTGGAGGAATCCTGTCTTGCGGTA
TAACGCACACGGCTGTGGTGCCCCTGGACCTGGTGAAGTGCCGGCTGCAG
GTGGACGCTGACAAGTACAAGAACGTGGTGACCGGCTTCAAGGTGTCGGT
GAAGGAGGAGGGCATGCGCGGGCTGGCCAAGGGCTGGGCGCCCACCTTTA
TTGGATACTCGCTGCAGGGTCTCTGCAAGTTTGGGCTGTACGAGGTGTTC
AAGGTGACGTACGCGGGTCTGCTGGACGAGGAGACGGGCTACACGTACCG
CACGGCGGTGTACCTCGCCGCCTCCGCCTCGGCCGAGTTCTTCGCCGACA
TCGCGCTGTCGCCGCTCGAGGCTGCCAAGGTTCGCATCCAAACGATGCCC
GGTTTCGCCAACACTCTGCGCGAGGCGTGGCCCAAGATGGTGAAGAACGA
GGGCTACGGCACCTTCTACAAGGGACTCGCGCCCTTGTGGGGCCGCCAGA
TCCCCTACACCATGATGAAGTTCGCCTGCTTCGAGAAGACCGTTGAACTG
CTGTACAAGCACGTGGTGCCGAAGCCGCGCGCCGACTGCACCAAGGGCGA
GCAGCTGGTGGTGACGTTCGCGGCGGGCTACATCGCCGGCGTCTTCTGCG
CCATCGTGTCGCACCCCGCCGACACCGTCGTGTCCAAGCTCAACCAGGAC
AAGACGGCGACGGTGGGCTCCATCATCGGCAAGCTGGGCATGGCGGGCCG
TGTGGGAAGG
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