FC878726

Overview
NameFC878726
Unique NameFC878726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length918
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA1_BACSU (Membrane protein oxaA 1 OS=Bacillus subtilis GN=oxaA1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.216e-17
Identity = 45/130 (34.62%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  408 ISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG----NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFW 785
            +SE + +V K+  D         +YG +IIL+T+++++   PL  KQ+ S+ AMQ LQP+++ ++++Y+      Q+++Q ET  L+++ GVNPLAGC P L  +P+ IG Y A+  +  + +    F W
Sbjct:   46 LSELITYVAKLTGD---------NYGLSIILVTILIRLLILPLMIKQLRSSKAMQALQPEMQKLKEKYSSKDQKTQQKLQQETMALFQKHGVNPLAGCFPILIQMPILIGFYHAI--MRTQAISEHSFLW 164          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_STRAW (Membrane protein oxaA OS=Streptomyces avermitilis GN=oxaA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.506e-17
Identity = 37/93 (39.78%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  474 YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 752
            +++G +I+ L +++++   PL  KQ+++T AMQ LQP++K IQ+RY  +++R   E  +LY+++G NPL+ CLP LA  P +  LY  L+ +A
Sbjct:   36 WAWGLSIVSLVILIRICLIPLFVKQIKATRAMQTLQPEMKKIQERYKNDKQRQSEEMMKLYKESGTNPLSSCLPILAQSPFFFALYHVLNGIA 128          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_PROA2 (Inner membrane protein oxaA OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=oxaA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.506e-17
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  477 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTI 815
            +YG  II+   ++K+ T+PLT    +S   M  LQP +K IQ++Y  N  ++Q E  R+Y++AGVNPL GCLP +  +P+   ++    +     L   GF W   LS P +I
Sbjct:  361 NYGLIIIIFAFLIKLVTYPLTMASTKSMKKMSALQPMMKEIQEKYKDNPAKLQSELGRIYKEAGVNPLGGCLPVVLQMPLLFAMFYVFRSSIQ--LRQHGFLWANDLSVPDSI 471          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_MANSM (Inner membrane protein oxaA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=oxaA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.506e-17
Identity = 48/136 (35.29%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  393 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLS 800
            GW  FI++ + ++L +++  +       ++G AII +T++VK   +PLTK Q  S   M+ LQPK++ +++R+  +++R+  E  +LY++  VNPL GCLP L  +P++I LY      A E      F WI  LS
Sbjct:  326 GWAWFIAKPLFWLLNVIQSIVS------NWGLAIIGVTIVVKGILYPLTKAQYTSMAKMRMLQPKLQEMRERFGDDRQRMSQEMMKLYKEEKVNPLGGCLPLLIQMPIFIALYWTFME-AVELRHAPFFGWIQDLS 454          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_BORHD (Inner membrane protein oxaA OS=Borrelia hermsii (strain DAH) GN=oxaA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.506e-17
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  405 FISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIP 791
            FI   M+ +++I  + I       ++G +I+ LT++V++  FPLT K   +T  +  LQPK+K IQ ++  + +R+  E  +LYR+ GVNPL GC P L  +PV+  LY     + N   L  G  +IP
Sbjct:  322 FIQVPMQLIMQIFYNVIP------NWGLSIMFLTIVVRILIFPLTFKSFRATAELSKLQPKMKEIQVKFKNDPKRLNEEMGKLYREEGVNPLGGCFPILLQLPVFFALY----GLVNNFFLLRGASFIP 440          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_ALISL (Inner membrane protein oxaA OS=Aliivibrio salmonicida (strain LFI1238) GN=oxaA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.506e-17
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  393 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLS 800
            GW  FI+  +  +L  ++  +       ++G AI++LT IV+ A +PLTK Q  S   M+ LQPK+ A+++R   +++R+  E   LY++  VNPL GCLP +  +P++I LY AL  + +  L    FF WI  LS
Sbjct:  329 GWLWFIASPLHKLLSFIQSIVG------NWGLAIMILTFIVRGAMYPLTKAQYTSMAKMRMLQPKLAAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPIVLQMPIFISLYWAL--MESVELRHAPFFGWITDLS 457          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_GEOSL (Inner membrane protein oxaA OS=Geobacter sulfurreducens GN=oxaA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  387 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 740
            N GWF  +++ +   LK   +         +YG AII++TVI+KV  +PLT    +S   MQ LQPK++ ++++Y  ++E +      LY+   VNP+ GCLP L  IPV+  LY+AL
Sbjct:  320 NLGWFAMLAKPLLHSLKFFHNYTG------NYGIAIIIITVIIKVIFYPLTHSSYKSMKEMQKLQPKMQQLREKYKNDREAMNRAMMELYQTHKVNPVGGCLPMLVQIPVFFALYKAL 431          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_CHLTE (Inner membrane protein oxaA OS=Chlorobium tepidum GN=oxaA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17
Identity = 40/113 (35.40%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  477 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTI 815
            +YG  II+   ++K+ T+PL+    +S   M  LQP +K +Q++Y  N  ++Q E  R+Y++AGVNPL GCLPT+  +P+   ++    +     L   GF W+  LS P ++
Sbjct:  366 NYGLIIIIFAFLIKLVTWPLSLASTKSMKKMSALQPVMKELQEKYKDNPAKLQSELGRIYKEAGVNPLGGCLPTVIQMPLLFAMFYVFRSSIQ--LRQHGFLWVKDLSVPDSV 476          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_BORDL (Inner membrane protein oxaA OS=Borrelia duttonii (strain Ly) GN=oxaA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17
Identity = 41/114 (35.96%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  405 FISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 746
            F+   M+ +++I  + I       ++G +I+ LT++V++  FPLT K   +T  +  LQPK+K IQ ++  + +R+  E S+LYR+ GVNP+ GC P L  +PV+  LY  ++N
Sbjct:  322 FLQVPMQLIMQIFYNVIP------NWGLSIMFLTIVVRILIFPLTFKSFRATAELSKLQPKMKEIQVKFKSDPKRLNEEMSKLYREEGVNPIGGCFPILLQLPVFFALYGLVNN 429          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA1_BACHD (Membrane protein oxaA 1 OS=Bacillus halodurans GN=oxaA1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17
Identity = 46/126 (36.51%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  477 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG----NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFW----------IPSLSGPTT 812
            S+G AII++T+++++   PL  KQ++ST AMQ LQP+++A++++Y+      Q+++Q ET  L+++ GVNPLAGC P L  +P+ +  Y A+      G   E F W          +P ++G TT
Sbjct:   58 SFGLAIIVVTLLIRLLILPLMIKQLKSTRAMQALQPEMQALREKYSAKDQRTQQKLQQETMALFQKHGVNPLAGCFPVLIQMPILLAFYHAIMRTREIG--DEHFLWFVLNQPDPILLPIIAGITT 181          
The following BLAST results are available for this feature:
BLAST of FC878726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
OXAA1_BACSU4.216e-1734.62Membrane protein oxaA 1 OS=Bacillus subtilis GN=ox... [more]
OXAA_STRAW5.506e-1739.78Membrane protein oxaA OS=Streptomyces avermitilis ... [more]
OXAA_PROA25.506e-1737.17Inner membrane protein oxaA OS=Prosthecochloris ae... [more]
OXAA_MANSM5.506e-1735.29Inner membrane protein oxaA OS=Mannheimia succinic... [more]
OXAA_BORHD5.506e-1735.66Inner membrane protein oxaA OS=Borrelia hermsii (s... [more]
OXAA_ALISL5.506e-1737.23Inner membrane protein oxaA OS=Aliivibrio salmonic... [more]
OXAA_GEOSL7.191e-1738.14Inner membrane protein oxaA OS=Geobacter sulfurred... [more]
OXAA_CHLTE7.191e-1735.40Inner membrane protein oxaA OS=Chlorobium tepidum ... [more]
OXAA_BORDL7.191e-1735.96Inner membrane protein oxaA OS=Borrelia duttonii (... [more]
OXAA1_BACHD7.191e-1736.51Membrane protein oxaA 1 OS=Bacillus halodurans GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71CA10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878726 ID=FC878726; Name=FC878726; organism=Citrus clementina; type=EST; length=918bp
CCCGTGCTTCCTCATCTCCACCATTCATGAGAAGCTGAGCTCAATTCTCA
TAAAAAAAAAAAAAAAAAGAAAAGAAAAATTCACCCTCCATGACGAAAAC
TCTGATTTCATCTCCACCGTTCGTCGGCACACCACTCCCTTCACCATTAT
CGTCACTCTCTCGCCACGGGCTCCACCCGCTTCCTAACCGTAGACTCGCC
TCCACCAGAGTTAGACTCAGCTTCCAAGAAATTCCTCCAATTCTCTCCCT
CGACTCTTCTATCGATCTCAACTCAGTTTTTAGTCGAACTGAGAGCTTGC
TTTACACGCTGGCAGACGCTGCCGTTTCACTTGATTCTGCTTCTGGCGGA
GCTGCCTCCACGTCAGCTGATGGGGCTACGCAGAAAAACGGCGGCTGGTT
CGGTTTTATCTCTGAAGCTATGGAATTCGTTCTCAAGATATTGAAGGATG
GGATTGATGCTGTTCATGTGCCGTATTCATATGGCTTTGCAATAATTTTG
TTGACAGTTATTGTTAAAGTTGCCACATTTCCTTTAACAAAGAAACAGGT
GGAATCAACATTAGCAATGCAAAACCTTCAACCTAAGATCAAAGCTATTC
AACAAAGATATGCTGGCAATCAGGAAAGAATTCAGCTTGAGACATCACGT
TTATACCGGCAGGCTGGGGTTAATCCATTAGCAGGTTGTTTGCCAACATT
GGCTACTATACCAGTCTGGATAGGTCTCTATCAAGCTCTTTCAAATGTGG
CAAATGAGGGTCTGTTAACAGAAGGTTTCTTTTGGATACCCTCATTGTCT
GGGCCAACTACGATTGCTGCTCGACAAAGTGGATCTGGCATTTCCTGGCT
CTTAACGTTTGTGGATGGGCATCCGCCATTGGGCTGGCATGACACTGCTG
CATACCTTGTTTTACCTG
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