FC878759

Overview
NameFC878759
Unique NameFC878759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.380e-47
Identity = 96/163 (58.90%), Postives = 128/163 (78.53%), Query Frame = 3
Query:  306 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVE-DSELADVAAVSACNNYEVGNMIAQAMSKVGR 791
            D  A   L  G++ +AD V +TLGPKGRNVVLE K+GAP I NDGVT+AKE++LEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ L+ EG+K V AGANP+ + RGIEK  + +V ELK +++ VE   ++A VAA+SA N+ E+GN+IA+AM KVG+
Sbjct:    9 DMQARTALIRGLDIVADTVKITLGPKGRNVVLEKKFGAPVITNDGVTIAKEIDLEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQALVHEGMKHVVAGANPMYVRRGIEKAVEKVVEELKKIAKPVETKQDIAHVAAISANNDTEIGNLIAEAMDKVGK 171          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_ANATD (60 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groL PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.380e-47
Identity = 97/170 (57.06%), Postives = 135/170 (79.41%), Query Frame = 3
Query:  279 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKV 785
            AAK + F+++  A + L+ GVNKLAD V VTLGPKGRNVVLE K+G+P+IVNDGVT+AKE+ELEDP EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ +I EG+K +AAGANP+++ +GI+K    +V E++ MS++V   E +  VA++SA  + E+G ++A AM KV
Sbjct:    2 AAKMILFDEE--ARRALERGVNKLADTVKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKNIAAGANPMILRKGIQKAVDVVVEEIRKMSKKVRGKEDITYVASISA-GDEEIGKLVADAMEKV 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH601_ANASL (60 kDa chaperonin 1 OS=Anabaena sp. (strain L31) GN=groL1 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.380e-47
Identity = 97/171 (56.73%), Postives = 133/171 (77.78%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVGR 791
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE KYGAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV  ++  ++ VEDS+ +A V A+SA N+ EV  MIA+A+ KVG+
Sbjct:    2 AKRIIYNEN--ARRALERGIDILAEAVAVTLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGIDKATNFLVDRIREHARSVEDSKAIAQVGAISAGNDDEVRQMIAEALDKVGK 170          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.802e-47
Identity = 98/171 (57.31%), Postives = 133/171 (77.78%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVGR 791
            AK+L F++D  A + L+ GV+ LA+ V VTLGPKGRNVVLE  +GAP I NDGV++A+E+ELE+  EN+GA+ V++ A KTND+AGDGTTT+ VLAQ +  EG+K VAAGANP+++ RGIEK  + LV E+K +S+ VE  E ++ VAA+SA N+ EVG +IA+AM KVG+
Sbjct:    2 AKELKFSED--ARRALERGVDTLANAVKVTLGPKGRNVVLEKSFGAPTITNDGVSIAREIELENHYENMGAQTVKEVATKTNDVAGDGTTTATVLAQAIFKEGLKNVAAGANPMILKRGIEKAVQKLVEEIKELSKPVEGKEAVSQVAAISAGNDEEVGKLIAEAMEKVGQ 170          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_LISW6 (60 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.354e-47
Identity = 100/170 (58.82%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVG 788
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +S+ +E  E +A VAA+S+  + EVG +IA+AM +VG
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISS-GDEEVGKLIAEAMERVG 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_LISMO (60 kDa chaperonin OS=Listeria monocytogenes GN=groL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.354e-47
Identity = 100/170 (58.82%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVG 788
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +S+ +E  E +A VAA+S+  + EVG +IA+AM +VG
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISS-GDEEVGKLIAEAMERVG 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_LISMH (60 kDa chaperonin OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=groL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.354e-47
Identity = 100/170 (58.82%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVG 788
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +S+ +E  E +A VAA+S+  + EVG +IA+AM +VG
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISS-GDEEVGKLIAEAMERVG 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_LISMF (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.354e-47
Identity = 100/170 (58.82%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVG 788
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +S+ +E  E +A VAA+S+  + EVG +IA+AM +VG
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISS-GDEEVGKLIAEAMERVG 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_LISMC (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.354e-47
Identity = 100/170 (58.82%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVG 788
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +S+ +E  E +A VAA+S+  + EVG +IA+AM +VG
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISS-GDEEVGKLIAEAMERVG 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_LISIN (60 kDa chaperonin OS=Listeria innocua GN=groL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.354e-47
Identity = 100/170 (58.82%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVG 788
            AKD+ F++D  A + +  GV++LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +S+ +E  E +A VAA+S+  + EVG +IA+AM +VG
Sbjct:    2 AKDIKFSED--ARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISS-GDEEVGKLIAEAMERVG 168          
The following BLAST results are available for this feature:
BLAST of FC878759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DICT61.380e-4758.9060 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH60_ANATD1.380e-4757.0660 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH601_ANASL1.380e-4756.7360 kDa chaperonin 1 OS=Anabaena sp. (strain L31) G... [more]
CH60_HALOH1.802e-4757.3160 kDa chaperonin OS=Halothermothrix orenii (strai... [more]
CH60_LISW62.354e-4758.8260 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH60_LISMO2.354e-4758.8260 kDa chaperonin OS=Listeria monocytogenes GN=gro... [more]
CH60_LISMH2.354e-4758.8260 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMF2.354e-4758.8260 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMC2.354e-4758.8260 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISIN2.354e-4758.8260 kDa chaperonin OS=Listeria innocua GN=groL PE=3... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA79DG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878759 ID=FC878759; Name=FC878759; organism=Citrus clementina; type=EST; length=791bp
CCAACTCTCAGCTCCTACTCTGCCTGCAGCTCCCCTTATCTCTTTAAACC
CTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTAAACGAATAAATGGC
GTCGACTTTCACTGCCATGTCTTCCATTATCTCCATGATTGCTCCTAATG
GACGAATGACTGATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCA
CTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCT
ACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCA
ACAAGGATGGATATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTT
GCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCT
AGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGG
CCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTA
GTGAGACAAGCAGCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAAC
AACATCTGTTGTTCTTGCTCAAGGGCTTATAACTGAAGGTGTTAAGGTCG
TGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACA
TCTAAGGCTCTTGTTTCTGAGCTCAAGCATATGTCACAAGAGGTTGAAGA
TAGTGAACTTGCCGATGTAGCAGCTGTTAGTGCATGTAACAACTATGAAG
TTGGGAATATGATTGCACAAGCCATGAGTAAAGTGGGACGT
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