FC878759

Overview
NameFC878759
Unique NameFC878759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_GUITH (60 kDa chaperonin, chloroplastic OS=Guillardia theta GN=groL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.993e-46
Identity = 92/160 (57.50%), Postives = 126/160 (78.75%), Query Frame = 3
Query:  315 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVGR 791
            A + L+ G++ LA+ V VTLGPKGRNVVLE KYGAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ +G+K VAAGAN + + RGIEK ++ +V+++   ++ VED+  ++ VA++SA N+ E G MIA A+ KVGR
Sbjct:   11 ARRALERGMDILAEAVSVTLGPKGRNVVLERKYGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAMVKQGMKNVAAGANAIALKRGIEKATQFIVTQIAEYARPVEDTRAISQVASISAGNDIETGKMIADAIDKVGR 170          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.603e-46
Identity = 100/170 (58.82%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVG 788
            AKDL F++D  A + +  GV+ LAD V VTLGPKGRNVVL+ K+G+P I NDGVT+AKE+ELED  EN+GA+LV + A+KTND+AGDGTTT+ VLAQ +I EG+K V +GANPV I RGIEK  +  V ELK +SQ +E  E ++ +AAVS+  + EVG +IA+AM +VG
Sbjct:    2 AKDLKFSED--ARRAMLRGVDTLADAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDAFENMGAQLVSEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTSGANPVGIRRGIEKAVELAVQELKGISQPIESKEAISQIAAVSS-GDEEVGQLIAEAMERVG 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_LEUMM (60 kDa chaperonin OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=groL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.603e-46
Identity = 100/170 (58.82%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVE-DSELADVAAVSACNNYEVGNMIAQAMSKVG 788
            AK+L F++D  A  K++ GV+KLAD V  T+GPKGRNVVLE  YGAP I NDGVT+AK +ELED  EN+GAKLV + A+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I  GIEK + A V++L  MS  V    E+A +A++SA N  EVG +IA+AM KVG
Sbjct:    2 AKELKFSEDARA--KMKAGVDKLADTVKTTIGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHFENMGAKLVAEVASKTNDIAGDGTTTATVLTQAIVGEGLKNVTAGANPVGIRTGIEKATAAAVAKLHEMSHTVNTKDEIAQIASISAANE-EVGELIAEAMDKVG 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_DESMR (60 kDa chaperonin OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=groL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.603e-46
Identity = 94/172 (54.65%), Postives = 134/172 (77.91%), Query Frame = 3
Query:  279 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVED-SELADVAAVSACNNYEVGNMIAQAMSKVGR 791
            AAK++ F  D  A +KL+ GV+KLA+ V VTLGPKGRNVV+E  +G+P I  DGVTVAKE+ELED  EN+GA++V++ A+KT+D+AGDGTTT+ +LAQ + TEGVK+VAAG NP+ I RGI+K   ++V+EL+ +++   D  E+A V  +SA ++  +GN+IA+AM+KVG+
Sbjct:    2 AAKEILF--DSKAREKLKRGVDKLANAVKVTLGPKGRNVVIEKSFGSPIITKDGVTVAKEIELEDKFENMGAQMVKEVASKTSDIAGDGTTTATILAQAIFTEGVKLVAAGRNPMAIKRGIDKAVASVVAELETLAKPTRDQKEIAQVGTISANSDATIGNIIAEAMNKVGK 171          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.603e-46
Identity = 94/171 (54.97%), Postives = 129/171 (75.44%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVGR 791
            AK + +N++  A + L+ G++ L + V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LVS++K M++ + DS  +A V  +SA N+ EVG MIA AM KVG+
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILCEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVSKIKEMAKPIADSNAIAQVGTISAGNDEEVGKMIADAMDKVGK 170          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH602_MOOTA (60 kDa chaperonin 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL2 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.603e-46
Identity = 96/171 (56.14%), Postives = 132/171 (77.19%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVGR 791
            AK + F+++  A + L+ G+ KL + V VTLGP+GRNVVLE K+GAP I NDGVT+AKEVELEDP+EN+GA LVR+ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGIEK   A+V  LK  ++ VE  + ++ VA++SA N+ ++G ++A AM KVG+
Sbjct:    2 AKQVVFDRE--AREALEKGITKLTEAVRVTLGPRGRNVVLEKKFGAPTITNDGVTIAKEVELEDPLENVGALLVREVASKTNDVAGDGTTTACVLAQAIVREGMKNVAAGANPMFMKRGIEKAVAAVVENLKAQARPVETKDSISQVASISA-NDPQIGALVADAMEKVGK 169          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH601_PSYIN (60 kDa chaperonin 1 OS=Psychromonas ingrahamii (strain 37) GN=groL1 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.603e-46
Identity = 94/170 (55.29%), Postives = 128/170 (75.29%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVG 788
            +K++ F  D  +  K+ NGVN LAD V +TLGPKGRNVV++  YGAP+I  DGVTVAKE+ELED  EN+GA++V+  A++TND AGDGTTT+ VLAQ +I +G+K VAAG NP+ + RGI++T KA V+ELK +S    DS+ +  V  +SA +++E+G +IAQAM KVG
Sbjct:    2 SKEIKFGND--SRSKMLNGVNILADAVKITLGPKGRNVVIDKSYGAPQITKDGVTVAKEIELEDKFENMGAQMVKDVASQTNDAAGDGTTTATVLAQAIIADGLKAVAAGMNPMDLKRGIDQTVKAAVAELKKLSTPCSDSKAITQVGTISANSDHEIGEIIAQAMQKVG 169          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.399e-46
Identity = 101/170 (59.41%), Postives = 127/170 (74.71%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVED-SELADVAAVSACNNYEVGNMIAQAMSKVG 788
            AKD+ F+++  A + L  GV+KLAD V  T+GPKGRNVVLE  YG P I NDGVT+AK +EL+D  EN+GAKLV +AA KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIEK +KA V EL  +S +VE   ++A+VAAVS+ +  EVG +IA AM KVG
Sbjct:    2 AKDIKFSEN--ARRSLLKGVDKLADTVKTTIGPKGRNVVLEQSYGNPDITNDGVTIAKSIELKDRYENMGAKLVAEAAQKTNDIAGDGTTTATVLTQAIVREGMKNVTAGANPVGIRRGIEKATKAAVDELHKISHKVESKDQIANVAAVSSASK-EVGALIADAMEKVG 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.399e-46
Identity = 101/170 (59.41%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVE-DSELADVAAVSACNNYEVGNMIAQAMSKVG 788
            AKD+ F+++  A + L  GV+KLAD V  TLGPKGRNVVLE  YGAP I NDGVT+AK ++L+D  EN+GAKLV +AA KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIE  +KA V EL  +S +V    E+A VA+VS+ +  EVGN+IA AM KVG
Sbjct:    2 AKDIKFSEN--ARRSLLKGVDKLADTVKTTLGPKGRNVVLEKSYGAPDITNDGVTIAKSIDLKDHFENMGAKLVSEAAQKTNDIAGDGTTTATVLTQAIVREGMKNVTAGANPVGIRRGIETATKAAVDELHKISHKVSTKDEIAQVASVSSAST-EVGNLIADAMEKVG 168          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.399e-46
Identity = 88/160 (55.00%), Postives = 125/160 (78.12%), Query Frame = 3
Query:  315 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVGR 791
            A K L+ G++ LA+ V VTLGPKGRNVV+E KYG P+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTTS VLA  ++ +G++ VAAGANP+ + RGI+K ++ +++++   S+ VED++ +  VA +S+ N+  +G MIA A+ KVGR
Sbjct:   11 ARKALEKGIDILAEAVSVTLGPKGRNVVIEKKYGPPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTSTVLAHAIVKQGMRNVAAGANPIALKRGIDKATQFIINKISEYSRPVEDNKAITQVATISSGNDENIGKMIADAIEKVGR 170          
The following BLAST results are available for this feature:
BLAST of FC878759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GUITH1.993e-4657.5060 kDa chaperonin, chloroplastic OS=Guillardia the... [more]
CH60_OCEIH2.603e-4658.8260 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH60_LEUMM2.603e-4658.8260 kDa chaperonin OS=Leuconostoc mesenteroides sub... [more]
CH60_DESMR2.603e-4654.6560 kDa chaperonin OS=Desulfovibrio magneticus (str... [more]
CH602_SYNSC2.603e-4654.9760 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_MOOTA2.603e-4656.1460 kDa chaperonin 2 OS=Moorella thermoacetica (str... [more]
CH601_PSYIN2.603e-4655.2960 kDa chaperonin 1 OS=Psychromonas ingrahamii (st... [more]
CH60_LACH43.399e-4659.4160 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH60_LACGA3.399e-4659.4160 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_GALSU3.399e-4655.0060 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA79DG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878759 ID=FC878759; Name=FC878759; organism=Citrus clementina; type=EST; length=791bp
CCAACTCTCAGCTCCTACTCTGCCTGCAGCTCCCCTTATCTCTTTAAACC
CTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTAAACGAATAAATGGC
GTCGACTTTCACTGCCATGTCTTCCATTATCTCCATGATTGCTCCTAATG
GACGAATGACTGATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCA
CTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCT
ACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCA
ACAAGGATGGATATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTT
GCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCT
AGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGG
CCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTA
GTGAGACAAGCAGCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAAC
AACATCTGTTGTTCTTGCTCAAGGGCTTATAACTGAAGGTGTTAAGGTCG
TGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACA
TCTAAGGCTCTTGTTTCTGAGCTCAAGCATATGTCACAAGAGGTTGAAGA
TAGTGAACTTGCCGATGTAGCAGCTGTTAGTGCATGTAACAACTATGAAG
TTGGGAATATGATTGCACAAGCCATGAGTAAAGTGGGACGT
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