FC878761

Overview
NameFC878761
Unique NameFC878761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878761 vs. ExPASy Swiss-Prot
Match: HPPD_TETTH (4-hydroxyphenylpyruvate dioxygenase OS=Tetrahymena thermophila GN=TFA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 73/268 (27.24%), Postives = 118/268 (44.03%), Query Frame = 1
Query:  103 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEP---TDEISSFPLDYGIRRLDHAVGNVPE--LAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 879
            + H+ FW  +A   A  ++   G    A   L TG+   A++++R+   +   F+ PY                    +        + HG   + +A  VED    +N ++  GAK + PP  L +      IA V  YG+V+  ++   D      F+PGF      D +++   D     +DH VGN P+  +  A  + +    FH F       + T  S L S+V+ + D+ + +P+NEP  G KRKSQIQ Y++   G GV
Sbjct:   29 YDHLHFWVGNAKQAAGWYTSRFGFEYYAYKGLETGSREVATHVVRNKQGVTLAFSTPYGNDKD---------------NQREMNQHQSLHGDGVKDVAFAVEDCHSIYNKAIQRGAKCAYPPQDLKDEHGSVTIAAVHTYGEVIHTFIQRNDYKGF--FMPGFVAHPLKDPLNNVLPDISYNYVDHIVGNQPDNMMTSAADWYEKTLDFHRFWSVDDSMIHTEFSSLRSIVMTDYDQKIKMPINEPADG-KRKSQIQEYIDFYAGPGV 278          
BLAST of FC878761 vs. ExPASy Swiss-Prot
Match: HPPD_CAEBR (4-hydroxyphenylpyruvate dioxygenase OS=Caenorhabditis briggsae GN=hpd-1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18
Identity = 80/276 (28.99%), Postives = 121/276 (43.84%), Query Frame = 1
Query:  103 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILD-------NLAV-IAEVQLYGDV---VLRYVSYKDKANHLDFLPGFEPTDEISSFPLDY---GIRRLDHAVGNVPEL--APAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRK-SQIQTYLEHNEGAGV 879
            F HV F   +A   A  +    G    A   L TG+ + A + ++   + FVF +   P                  D+         HG   + +  EVED D    + VAH AK +   ++ D       N +V  A ++ YG+    +L    YK       FLPGF+P     +F       G+  LDH VGN P+L  APAV + ++   FH F       + T  S L S+V+ N +E + +P+NEP    K+  SQIQ ++++  G+GV
Sbjct:   18 FDHVRFVVGNAKQAAYWYCANFGFEPFAYKGLETGSRITAQHAIKQDKIVFVFESALLP------------------DNTELGEHLVQHGDGVKDVCFEVEDLD----SIVAH-AKAAGATIVRDITEESDENGSVRFATLRTYGETDHTLLERKKYKGA-----FLPGFKPHPMPPTFFHSLPRVGLNFLDHCVGNQPDLQMAPAVEWYENILKFHRFWSVDDSMIHTEYSALRSIVVTNFEETIKMPINEPASSNKKAVSQIQEFVDYYGGSGV 265          
BLAST of FC878761 vs. ExPASy Swiss-Prot
Match: HPPD2_ASPFU (Probable 4-hydroxyphenylpyruvate dioxygenase 2 OS=Aspergillus fumigatus GN=AFUA_4G10620 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 74/277 (26.71%), Postives = 123/277 (44.40%), Query Frame = 1
Query:  103 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACR------SFAASHGLAARSIAVEVE-DADVAFNTSVAHGAKPSSPPVILDN----LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFE---PTDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGT--SESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 879
            F H+ ++  +A   A  +   +G   +A     TG+    S+++ +G   FV T+P                  P    A  R      +    HG   + +A  +E D +  +  +V HGA P + P  L +       +A +  Y D V   ++  D +    FLPG+E     D I+          +DH VGN P   + P V Y +    FH +  +T +D+      S + S+V+A+ +E++ +PMNEP  G K+KSQI+ ++ +  GAGV
Sbjct:   23 FDHITWYVGNAKQAASYYVTRMGFKQIAYRGPETGSRSVVSHVISNGQAIFVLTSPIRSMAGTGAYDDD-----PDVTKADRRLLEEIHNHLIKHGDGVKDVAFRIEGDIEAVWKRAVDHGAAPVAAPTTLKDDRHGSITLATIGTYEDTVHSLINRHDYSG--PFLPGYEVVTDDDPINRLLPSIDFIEIDHCVGNQPWNGVDPIVKYYEDCLNFHRY--WTVDDLNMCGEYSAMRSIVVASPNEVIKMPMNEPAQG-KKKSQIEEFVNYYNGAGV 289          
BLAST of FC878761 vs. ExPASy Swiss-Prot
Match: HPPD_CAEEL (4-hydroxyphenylpyruvate dioxygenase OS=Caenorhabditis elegans GN=hpd-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 74/274 (27.01%), Postives = 116/274 (42.34%), Query Frame = 1
Query:  103 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVI--------LDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFE----PTDEISSFPLDYGIRRLDHAVGNVPELA--PAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRK-SQIQTYLEHNEGAGV 879
            F HV F   +A   A  +    G    A   L TG+ + A + +R   + F+F +   P                  D++   +    HG   + +  EVED D    + +AH AK +   ++         D     A ++ YG+     +  K+      FLPGF+    P     + P   G+  LDH VGN P+L    AV + +    FH F       + T  S L S+V+ N +E + +P+NEP    K+  SQIQ Y+++  G+GV
Sbjct:   18 FDHVRFVVGNAKQAAYWYCANFGFEPFAYKGLETGSRITAQHAIRQDKIVFIFESALLP------------------DNSELGNHLVQHGDGVKDVCFEVEDLD----SIIAH-AKAAGATIVHDITEESDADGSIRYATLRTYGETDHTLLERKNYRGA--FLPGFKAHPMPATFFKTLPR-VGLNFLDHCVGNQPDLQMDSAVQWYEKVLKFHRFWSVDDSMIHTEYSALRSIVVTNFEETIKMPINEPATSDKKAISQIQEYVDYYGGSGV 265          
The following BLAST results are available for this feature:
BLAST of FC878761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
HPPD_TETTH2.237e-2027.244-hydroxyphenylpyruvate dioxygenase OS=Tetrahymena... [more]
HPPD_CAEBR7.955e-1828.994-hydroxyphenylpyruvate dioxygenase OS=Caenorhabdi... [more]
HPPD2_ASPFU6.735e-1726.71Probable 4-hydroxyphenylpyruvate dioxygenase 2 OS=... [more]
HPPD_CAEEL4.365e-1627.014-hydroxyphenylpyruvate dioxygenase OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AD07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878761 ID=FC878761; Name=FC878761; organism=Citrus clementina; type=EST; length=879bp
AGAATAATGGGCAAAGAAACCGCTGAATTGCTGGTCAAGCTCGTCTGGTT
CAAAAACTTCGTCCGCCAGAATCCCAAATCGGACCGGTTCCGAGTGAACC
GCTTCCACCATGTCGAGTTCTGGTGCACTGACGCCACCAATACGGCTCGT
CGTTTCTCCTGGGGACTCGGCATGCCCATTGTCGCCAAATCGGACTTGTC
TACCGGCAACACTGTCCATGCATCTTACCTCTTACGTTCTGGCGACCTCC
GTTTCGTCTTTACGGCGCCGTATTCCCCTTCAATCTCCGACGCCGCCGAT
GCTGGCAACTCCTCAGCATCTCTCCCGACTTTCGACCACGCAGCTTGCCG
CAGTTTCGCCGCGTCTCATGGGCTCGCCGCGCGGTCGATTGCTGTTGAAG
TTGAAGACGCCGACGTTGCTTTCAACACCAGCGTGGCTCACGGTGCTAAG
CCCTCCTCTCCTCCTGTGATTCTCGATAACCTTGCTGTGATTGCCGAGGT
CCAGTTATACGGCGACGTCGTTTTGCGTTATGTTAGTTATAAAGATAAAG
CGAATCATCTTGATTTCCTGCCGGGTTTCGAACCGACGGATGAGATTTCA
TCGTTTCCGTTGGATTACGGAATCAGGCGGCTCGATCACGCCGTCGGCAA
CGTTCCGGAACTCGCTCCGGCTGTTGCTTATGTGAAATCATTCACTGGGT
TTCACGAGTTCGCCGAGTTCACAGCCGAAGACGTCGGCACGAGTGAGAGT
GGACTCAACTCAGTGGTGTTAGCAAACAACGATGAAATGGTATTGCTCCC
GATGAACGAGCCCGTGTTTGGGACGAAGCGTAAGAGTCAGATACAGACCT
ATCTGGAGCACAATGAGGGAGCTGGCGTG
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