FC878770

Overview
NameFC878770
Unique NameFC878770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length918
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.158e-33
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 436
            +G WT EED  L+ YI  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++  +  ID  S
Sbjct:   14 KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTS 125          
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.158e-33
Identity = 64/114 (56.14%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 436
            LRRGPWT EED  L+ +I+ +    W  + K +GL R GKSCRLRW NYL+PD+KRG  +  E+  IL+LH+  GNRWS+IA  LPGRTDNEIKNYW TR++K+ R   +D N+
Sbjct:   12 LRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNT 125          
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.349e-33
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 2
Query:   77 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            E     ++RG W  EED +L  Y+  H EG W  +++RSGLKR GKSCRLRW NYL+P++KRG+++PQEQ  I+ +H   GNRWS IA  LPGRTDNE+KNYW T + K+
Sbjct:    6 EEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 115          
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.221e-32
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEII 457
            +LR+G W+ EED  L+ YI+RH  G W+ + K +GL+R GKSCRLRW+NYL+PD+KRG  +  E+  I+ELH+  GNRWS+IA  LPGRTDNEIKN+W + ++K+ R   ID   TT + +I
Sbjct:   11 KLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGID--PTTHKPLI 130          
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.595e-32
Identity = 64/127 (50.39%), Postives = 83/127 (65.35%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ--------ARHLKIDANSTTFQEII 457
            +G WT EED  L+ YI  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T  E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++          H +I+ + T   +++
Sbjct:   14 KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINESKTVSSQVV 140          
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.083e-32
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   83 DSDQ-LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 427
            D D+ +++GPW  EED  L  YI+ +  G W  L K +GL R GKSCRLRW+NYL+PD++RG  +  E+ +I+ LH+  GN+WSKIA HLPGRTDNEIKNYW T ++K+   + ID
Sbjct:    8 DQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGID 123          
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.720e-32
Identity = 65/109 (59.63%), Postives = 76/109 (69.72%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 427
            RG WT EED  L+ YI  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T  E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T V+++     ID
Sbjct:   14 RGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGID 122          
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.720e-32
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 427
            +G WT EED  L+ YI  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID
Sbjct:   14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGID 122          
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.552e-32
Identity = 61/111 (54.95%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 427
            +++GPWT EED  LI +I  + +  W  + K +GLKR GKSCRLRW NYL+PD+KRG L+  E+  +++LHS+ GNRWSKIA  LPGRTDNEIKN+W T ++K+   + ID
Sbjct:   12 VKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGID 122          
BLAST of FC878770 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.552e-32
Identity = 64/109 (58.72%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 427
            +G WT EED  LI YI  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID
Sbjct:   14 KGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGID 122          
The following BLAST results are available for this feature:
BLAST of FC878770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB4_ARATH7.158e-3357.14Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB2_PHYPA7.158e-3356.14Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB82_ARATH9.349e-3355.45Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB86_ARATH1.221e-3253.28Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB6_ARATH1.595e-3250.39Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB39_ARATH2.083e-3253.45Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB38_MAIZE2.720e-3259.63Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB08_ANTMA2.720e-3257.80Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
ODO1_PETHY3.552e-3254.95Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB30_ANTMA3.552e-3258.72Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA33CG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878770 ID=FC878770; Name=FC878770; organism=Citrus clementina; type=EST; length=918bp
CGAAAAAGCAGTCTTTGTTAATGTTAGAACAAATATGTCTTCTTTTAGTA
AGAGCTCAACCTCATCTATTTATGGCGAAAATGATTCTGATCAGCTGAGG
AGAGGGCCGTGGACACTTGAAGAAGACACTCTACTCATTCAGTACATATC
TCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGGCTTGA
AGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGAAACCT
GATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTCTTGA
ACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCACTTAC
CAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGTTCAG
AAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTCAAGA
GATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGACACAT
CATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTAATTCT
CAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCACAAAT
AATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCAAGAAT
TGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTCCTGC
ATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTTTCGGA
GTACCCAACCGGTGACGACCATTTTCATGCTAGTAATAATGATAGCAGTG
AGTACAACACTTTTGCAAAAGATTTCTGTNCATTTGACAGCAACTGCTAT
GACATGGAAAACATCAGCCAGCCGGAAACCATGCGGGCGCCGCTGGCCGG
AGACTTCAACACCTGGGT
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