FC878772

Overview
NameFC878772
Unique NameFC878772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_ECOBW (Homoserine kinase OS=Escherichia coli (strain K12 / BW2952) GN=thrB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14
Identity = 62/205 (30.24%), Postives = 92/205 (44.88%), Query Frame = -2 
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 884
            A NE  G  L    L+    E E ++SG  H DN+AP  +GG  L+   E  D++    P   + L+VL  P  +  T + RA LPA+      I +       + A  +  P  L   L  D I EP R  L+PG           GA    ISG+GPT  A+ D  E  + + + + + + +  N +    + RLD  GAR++
Sbjct:  109 AMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLM--IEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPE-LAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVADWLGKNYLQ--NQEGFVHICRLDTAGARVL 308
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_ECO81 (Homoserine kinase OS=Escherichia coli O81 (strain ED1a) GN=thrB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14
Identity = 65/206 (31.55%), Postives = 97/206 (47.09%), Query Frame = -2 
Query:  273 AFNEMFGNKLLPDELVLAGL-ESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 884
            A NE  G KLL D  +LA + E E ++SG  H DN+AP  +GG  L+   E  D++    P   + L+VL  P  +  T + RA LPA+      I +       + A  +  P  L   L  D I EP R  L+PG           GA    ISG+GPT  A+ D  +  + + + + + + +  N +    + RLD  GAR++
Sbjct:  109 AMNEHCG-KLLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLM--IEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPE-LAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQ--NQEGFVHICRLDTAGARVL 308
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_CITK8 (Homoserine kinase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=thrB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 61/206 (29.61%), Postives = 92/206 (44.66%), Query Frame = -2 
Query:  270 AFNEMFGNKLLPDELVLAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLVG 884
            A NE  G  L    L+    E E ++SG  H DN+AP  +GG  L+   E   ++    P   + L+VL  P     T + RA LPA+      I +       + A  +  P  L   L  D I EP RA L+PG           GA    ISG+GPT  A+ D  +  + + + + + + +  N +    + +LD  GAR++G
Sbjct:  109 AMNEFCGKPLNDTRLLAIMGELEGRISGSIHYDNVAPCFLGGMQLM--IEENGIISQQVPGFDEWLWVLAYPGINVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPQ-LAAKLMKDVIAEPYRARLLPGFSQARQAVAEIGALASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQ--NQEGFVHICQLDTAGARVLG 309
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_SHISS (Homoserine kinase OS=Shigella sonnei (strain Ss046) GN=thrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 61/205 (29.76%), Postives = 92/205 (44.88%), Query Frame = -2 
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 884
            A NE  G  L    L+    E E ++SG  H DN+AP  +GG  L+   E  D++    P   + L+VL  P  +  T + RA LPA+      I +       + A  +  P  L   L  D I EP R  L+PG           GA    ISG+GPT  A+ D  +  + + + + + + +  N +    + RLD  GAR++
Sbjct:  109 AMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLM--IEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPE-LAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQ--NQEGFVHICRLDTAGARVL 308
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_SHIFL (Homoserine kinase OS=Shigella flexneri GN=thrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 61/205 (29.76%), Postives = 92/205 (44.88%), Query Frame = -2 
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 884
            A NE  G  L    L+    E E ++SG  H DN+AP  +GG  L+   E  D++    P   + L+VL  P  +  T + RA LPA+      I +       + A  +  P  L   L  D I EP R  L+PG           GA    ISG+GPT  A+ D  +  + + + + + + +  N +    + RLD  GAR++
Sbjct:  109 AMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLM--IEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPE-LAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQ--NQEGFVHICRLDTAGARVL 308
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_SHIF8 (Homoserine kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=thrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 61/205 (29.76%), Postives = 92/205 (44.88%), Query Frame = -2 
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 884
            A NE  G  L    L+    E E ++SG  H DN+AP  +GG  L+   E  D++    P   + L+VL  P  +  T + RA LPA+      I +       + A  +  P  L   L  D I EP R  L+PG           GA    ISG+GPT  A+ D  +  + + + + + + +  N +    + RLD  GAR++
Sbjct:  109 AMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLM--IEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPE-LAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQ--NQEGFVHICRLDTAGARVL 308
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_SHIDS (Homoserine kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=thrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 61/205 (29.76%), Postives = 92/205 (44.88%), Query Frame = -2 
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 884
            A NE  G  L    L+    E E ++SG  H DN+AP  +GG  L+   E  D++    P   + L+VL  P  +  T + RA LPA+      I +       + A  +  P  L   L  D I EP R  L+PG           GA    ISG+GPT  A+ D  +  + + + + + + +  N +    + RLD  GAR++
Sbjct:  109 AMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLM--IEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPE-LAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQ--NQEGFVHICRLDTAGARVL 308
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_SHIBS (Homoserine kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=thrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 61/205 (29.76%), Postives = 92/205 (44.88%), Query Frame = -2 
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 884
            A NE  G  L    L+    E E ++SG  H DN+AP  +GG  L+   E  D++    P   + L+VL  P  +  T + RA LPA+      I +       + A  +  P  L   L  D I EP R  L+PG           GA    ISG+GPT  A+ D  +  + + + + + + +  N +    + RLD  GAR++
Sbjct:  109 AMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLM--IEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPE-LAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQ--NQEGFVHICRLDTAGARVL 308
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_SHIB3 (Homoserine kinase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=thrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 61/205 (29.76%), Postives = 92/205 (44.88%), Query Frame = -2 
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 884
            A NE  G  L    L+    E E ++SG  H DN+AP  +GG  L+   E  D++    P   + L+VL  P  +  T + RA LPA+      I +       + A  +  P  L   L  D I EP R  L+PG           GA    ISG+GPT  A+ D  +  + + + + + + +  N +    + RLD  GAR++
Sbjct:  109 AMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLM--IEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPE-LAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQ--NQEGFVHICRLDTAGARVL 308
[Close]
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_PETMO (Homoserine kinase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=thrB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 53/177 (29.94%), Postives = 89/177 (50.28%), Query Frame = -2 
Query:  351 NEMFGNKLLPDELVLAGLESEAKVSGYHADNIAPAIMGGFVLIRSYEP-LDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMV 878
            NE+  N L  +E++      +      H DNI PA +GG  +    E  +  ++++ P + +LL ++  P+F   TKK R+ LP  V +   ++N S+ G LVA+++      L +A + DKI +P R   IP            G  G  +SG+GPT + ++D + K   I ++MV
Sbjct:  106 NELLNNPLKKEEIIYLAATMDG-----HTDNILPAFVGGLTVGSLLEKEVKYVKMDLPTQLKLLAII--PDFHFSTKKARSLLPKNVPIEDAVFNISRVGLLVASLVTSHFENLSEA-TKDKIHQPYRKDFIPYWEEITSKLMKIGTKGYFLSGSGPTIMGILDGDYKN--IEDEMV 272
The following BLAST results are available for this feature:
BLAST of FC878772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
KHSE_ECOBW4.109e-1430.24Homoserine kinase OS=Escherichia coli (strain K12 ... [more]
KHSE_ECO814.109e-1431.55Homoserine kinase OS=Escherichia coli O81 (strain ... [more]
KHSE_CITK87.009e-1429.61Homoserine kinase OS=Citrobacter koseri (strain AT... [more]
KHSE_SHISS9.154e-1429.76Homoserine kinase OS=Shigella sonnei (strain Ss046... [more]
KHSE_SHIFL9.154e-1429.76Homoserine kinase OS=Shigella flexneri GN=thrB PE=... [more]
KHSE_SHIF89.154e-1429.76Homoserine kinase OS=Shigella flexneri serotype 5b... [more]
KHSE_SHIDS9.154e-1429.76Homoserine kinase OS=Shigella dysenteriae serotype... [more]
KHSE_SHIBS9.154e-1429.76Homoserine kinase OS=Shigella boydii serotype 4 (s... [more]
KHSE_SHIB39.154e-1429.76Homoserine kinase OS=Shigella boydii serotype 18 (... [more]
KHSE_PETMO9.154e-1429.94Homoserine kinase OS=Petrotoga mobilis (strain DSM... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA1DF03FM1 IVIA1 Citrus clementina cDNA clone IC0AAA1DF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878772 ID=FC878772; Name=FC878772; organism=Citrus clementina; type=EST; length=885bp
TTTTTTTTTTTTTTTTTTTTTTTTTGCTCAACAAGTCTTAACATTCATCA
ACATCGAATTGGCTCGTATGATTGCTGCCAATCTACTTCAAAAACCAAAC
AATCATCAAAAAATTGATTCAGCATTCATTCATCTTCATCCATTGATTCA
GCATTCACCAAGCAAACCACACTCCATTCCGGTCTTATTAGCGAAGCAAT
CATCAAAAAATTTCTAAAACACATTCATTCATCTTCATATTTTCACATTC
ATCTGGGAGCCCGGACACTCCCAACAAGCCTGGCACCAACTCTATCCAAT
CTCTTAACCATAGACACCGCCTTCAAATTCCCTTCTTTCCAAAACGCCTC
CACCATCTTCTCTCCAATCACCTTCCCTTTCTCTTCATTATCCACTACCG
CCACCGCCGTGGGCCCGGCCCCGCTGATGGTGCACCCGTACGCTCCCGCC
TCAACTGCTACCTTCTTCACCGCCTCCATTCCCGGAATCAATGGGGCCCG
TTTTGGCTCCACAATCTTATCCGATGACAAGGCCTTCCCCAGCCCCACCG
GGTCCCCGTTCAACACTGCCGCCACCAACGCCCCCGCCTGGCTGCAGTTC
CAAATGTGGTGCGGCATCCCCACCTCCGCCGGCAACGCTGCCCGCATTTT
CTTGGTCGGCGCCTCGAATTCCGGAGTTACTAGAACAAAAAGAAGTTGCT
TTTTCTCAGGAAAATTTAGTCTCATCAAATCTAACGGCTCGTAACTACGA
ATCAAAACGAAACCACCCATGATCGCAGGAGCAATGTTATCGGCGTGGTA
ACCGGACACTTTAGCTTCCGATTCCAAGCCGGCGAGAACTAATTCATCCG
GGAGTAATTTATTTCCAAACATTTCGTTGAACGCT
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