FC878813

Overview
NameFC878813
Unique NameFC878813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.217e-24
Identity = 76/225 (33.78%), Postives = 124/225 (55.11%), Query Frame = 1
Query:  235 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMGLHQGAL 903
            HGG++      A +  + +  T ++     LG  +++  YSR  NPT   L   +A LEG    +  +SG++ I +VL  L S+G H++ A  +YGGT  L+     +   I    VD+S+ E + +A  +  TK +YFE+ SNP L V +I E+S +A       +VDNTF+ P +  P  LGAD+V+HS +K++ G +D++AG V   +N +   +G  Q ++
Sbjct:   10 HGGISTDRTTGAVSVPIYQTSTYKQ---NGLGQPKEYE-YSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVL-SLFSAGDHIILADDVYGGTFRLVDKVLTKT-GIIYDLVDLSNLEDLKAAF-KAETKAVYFETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIEIGFLQNSI 227          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.712e-24
Identity = 75/225 (33.33%), Postives = 124/225 (55.11%), Query Frame = 1
Query:  235 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMGLHQGAL 903
            HGG++      A +  + +  T ++     LG  +++  YSR  NPT   L   +A LEG    +  +SG++ I +VL  L S+G H++ A  +YGGT  L+     +   I    VD+S+ + + +A  +  TK +YFE+ SNP L V +I E+S +A       +VDNTF+ P +  P  LGAD+V+HS +K++ G +D++AG V   +  + S +G  Q ++
Sbjct:   10 HGGISTDKTTGAVSVPIYQTSTYKQ---NGLGQPKEYE-YSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVL-SLFSAGDHIILADDVYGGTFRLMDKVLTKT-GIIYDLVDLSNLDDLKAAFKE-ETKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSI 227          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.712e-24
Identity = 75/225 (33.33%), Postives = 124/225 (55.11%), Query Frame = 1
Query:  235 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMGLHQGAL 903
            HGG++      A +  + +  T ++     LG  +++  YSR  NPT   L   +A LEG    +  +SG++ I +VL  L S+G H++ A  +YGGT  L+     +   I    VD+S+ + + +A  +  TK +YFE+ SNP L V +I E+S +A       +VDNTF+ P +  P  LGAD+V+HS +K++ G +D++AG V   +  + S +G  Q ++
Sbjct:   10 HGGISTDKTTGAVSVPIYQTSTYKQ---NGLGQPKEYE-YSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVL-SLFSAGDHIILADDVYGGTFRLMDKVLTKT-GIIYDLVDLSNLDDLKAAFKE-ETKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSI 227          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METB_MYCLE (Cystathionine gamma-synthase OS=Mycobacterium leprae GN=metB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.712e-24
Identity = 76/205 (37.07%), Postives = 112/205 (54.63%), Query Frame = 1
Query:  238 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            G VN+ I AS+TF         +   GEL   R  F Y+R  NP    L   +A +E    A   +SGM+A    L  +   G HV+    +YGGT  L+   F +  N+  T V +SD + V +AI   RT++++ E+ +NP L++A+I  +  L     V V+VDNTF SP +  P  LGADVV+HS +K+I G +D++ GA+
Sbjct:   30 GAVNVPIYASSTFA--------QDGVGEL---RGGFEYARTGNPMRAALEASLATVEEGVFARAFSSGMAASDCALRVMLRPGDHVIIPDDVYGGTFRLIDKVFTQ-WNVDYTPVPLSDLDAVRAAITS-RTRLIWVETPTNPLLSIADITSIGELGKKHSVKVLVDNTFASPALQQPLMLGADVVLHSTTKYIGGHSDVVGGAL 221          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.626e-24
Identity = 71/207 (34.30%), Postives = 109/207 (52.66%), Query Frame = 1
Query:  235 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            HGG++      A +  + +  T R+   G        + YSR  NPT   L   +A LEG    +  ASG++ I +V   L  SG HV+    +YGGT  L      +   ++ T +D SD   +  AI +  TK LY E+ SNP L + ++ + + +A D G+  +VDNTF +P   +P  LGAD+V HS +K++ G +D++AG V
Sbjct:    9 HGGISEDATTGAVSVPIYQTSTYRQDAIGR----HKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVF-SLLQSGDHVLLGDDVYGGTFRLFNQVLVKN-GLSCTIIDTSDISQIKKAI-KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLV 208          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METB_ECOLI (Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.626e-24
Identity = 67/168 (39.88%), Postives = 96/168 (57.14%), Query Frame = 1
Query:  349 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            YSR  NPT   + R +A LEG   A  T +GMSAI  V       G  +VA    YGG++ L      R C     FVD  D + + +A+ + + K++  ES SNP L V +I ++  LA + G   VVDNTF SP + +P  LGAD+V+HS +K+++G +D++AG V
Sbjct:   46 YSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC-YRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVV 211          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METC_ARATH (Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.758e-23
Identity = 68/186 (36.56%), Postives = 114/186 (61.29%), Query Frame = 1
Query:  295 TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            T ++  A E GP    + Y+R  NPT   L   +A L+  + A+C  SGM+A+S+V   L  +G  +VA   +YGG+  LL+   PR+  +    V+ +  + V +AI   +TK+++ ES +NP   +++I ++S +AH +G  V+VDN+  SP++  P  LGAD+V+HS +KFI+G +D++AG +
Sbjct:  113 TFKQPSAIENGP----YDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL 291          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: CYSD_SCHPO (O-acetylhomoserine (thiol)-lyase OS=Schizosaccharomyces pombe GN=SPBC428.11 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.998e-23
Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  343 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            +IYSR  NPT     +++AALE   AA  T+SG SA+   L  L  +G ++V+   LYGGT+ L     PR   ITT FV+  D   + +A +   TK +Y ESI NP   V +   ++ +AH  GV ++VDNTF     ++ P   GAD+V HS +K+I G    I G +
Sbjct:   55 YIYSRMMNPTADVFEKRIAALEHGAAAIATSSGTSALFMALTTLAKAGDNIVSTSYLYGGTYNLFKVTLPR-LGITTKFVNGDDPNDL-AAQIDENTKAVYVESIGNPMYNVPDFERIAEVAHAAGVPLMVDNTFGGGGYLVRPIDHGADIVTHSATKWIGGHGTTIGGVI 223          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: MET17_KLULA (Protein MET17 OS=Kluyveromyces lactis GN=MET17 PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 3.315e-22
Identity = 65/171 (38.01%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  343 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            +IYSR  NPT+  L +++AALEG  AA  T+SG +A +  +  L  +G ++V+   LYGGT+      F R   I   FVD  D       +   +TK LY ESI NP   V +  ++  +AH  G+ VVVDNTF        P + GAD+V HS +K+I G    + G +
Sbjct:   53 YIYSRIMNPTLDVLEKRLAALEGGIAALATSSGQAAQTLAVTGLAHTGDNIVSTSFLYGGTYNQFKVAFKR-LGIEARFVD-GDKPEDFEKLFDEKTKALYLESIGNPKYNVPDFEKIVAVAHKHGIPVVVDNTFGAGGFFCQPIKYGADIVTHSATKWIGGHGVTVGGVI 221          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: CYS3_YEAST (Cystathionine gamma-lyase OS=Saccharomyces cerevisiae GN=CYS3 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.315e-22
Identity = 73/212 (34.43%), Postives = 114/212 (53.77%), Query Frame = 1
Query:  235 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSA--IVQGRTKVLYFESISNPTLAVANIPELSRL----AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            HG V   I  S TF    P       A  +G     + YSR  NP   NL R +AALE  +     +SG SA ++ ++Q    G H V+   +YGGTH   T     A  + T+F +    +++N    +++  TK+++ E+ +NPTL V +I +++ L    A  + V +VVDNTF SP + +P   GAD+VVHS +K+I+G +D++ G +
Sbjct:   23 HGSVIEPISLSTTFKQSSP-------ANPIGT----YEYSRSQNPNRENLERAVAALENAQYGLAFSSG-SATTATILQSLPQGSHAVSIGDVYGGTHRYFTKV-ANAHGVETSFTN----DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVL 217          
The following BLAST results are available for this feature:
BLAST of FC878813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
METC_LACLC1.217e-2433.78Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLM2.712e-2433.33Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA2.712e-2433.33Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METB_MYCLE2.712e-2437.07Cystathionine gamma-synthase OS=Mycobacterium lepr... [more]
METB_HELPY4.626e-2434.30Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
METB_ECOLI4.626e-2439.88Cystathionine gamma-synthase OS=Escherichia coli (... [more]
METC_ARATH1.758e-2336.56Cystathionine beta-lyase, chloroplastic OS=Arabido... [more]
CYSD_SCHPO2.998e-2339.18O-acetylhomoserine (thiol)-lyase OS=Schizosaccharo... [more]
MET17_KLULA3.315e-2238.01Protein MET17 OS=Kluyveromyces lactis GN=MET17 PE=... [more]
CYS3_YEAST3.315e-2234.43Cystathionine gamma-lyase OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BC04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878813 ID=FC878813; Name=FC878813; organism=Citrus clementina; type=EST; length=912bp
ACCAATACATATTGATCATCAGCCTAGAATTAGATCCTCGAATATAAAAA
AAAAAAAAAAATTAAAGATCAAATGGCCGAATGCTTTGTGCTATCTAGCA
AGAAAAGATCGGCGGGGACGGAGGAAACCGACGGCGATGATCTTTATAAG
ACGAAGAAATCAATGTTATCGACTGCAGCAGCATGGGAGGACCCTGCTGC
TGCATTAGCCAGTGCCAGGCATGAGTTTGGTGAACACGGTGGCGTTAACA
TGTCCATCGAAGCCTCTGCCACCTTCACTGTCATGGAGCCCGAGACCATG
CGCCGCATGTTCGCCGGCGAGCTTGGCCCCGACCGTGATTTCTTCATCTA
CAGCCGTCACTTTAACCCCACTGTCTTAAATCTCAGCCGTCAGATGGCGG
CTCTCGAAGGAACCGAGGCCGCTTATTGCACCGCCAGCGGTATGTCTGCA
ATTTCGTCCGTATTGATGCAACTATGCAGCAGTGGAGGACACGTGGTGGC
AGCGCGTACACTCTATGGCGGGACTCATGCTTTGCTGACCCACTTTTTCC
CGAGGGCTTGCAACATAACGACGACGTTCGTCGACATCAGCGATCACGAG
ATGGTGAATAGTGCAATTGTTCAAGGAAGGACAAAGGTGCTGTACTTTGA
GTCCATCTCTAACCCTACGCTCGCCGTGGCTAATATCCCCGAGCTGAGCC
GTTTGGCTCACGATAAGGGAGTTACCGTCGTGGTGGATAACACATTTTCT
CCACTGGTTCTGTCGCCGGCTCGGCTCGGAGCTGACGTCGTTGTGCACAG
CATCTCCAAGTTTATCAGTGGTGGGGCCGATATCATTGCAGGTGCTGTTT
GTGGGCCAGCGAACCTTGTGAACTCTATGATGGGACTTCACCAAGGAGCC
TTGATGCTGTTG
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