FC878906

Overview
NameFC878906
Unique NameFC878906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length814
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.371e-21
Identity = 61/133 (45.86%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  154 FTITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPA-SWSGRLWARTHCT-QDSKFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGC 546
            F I N C  TIWP  +   G       GF+L +GQ++SI+VPA + +GR+WART C+      +C TGDCG G L CS SG  PPATLAE+T+ G    DF+D+S++DG+NL M  +  T  G A  C    C
Sbjct:   23 FNIKNNCGFTIWPAGIPVGG-------GFALGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCG-GQLSCSLSGR-PPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFSCST--GDALQCRDPSC 144          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  154 FTITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWS-GRLWARTHCT-QDSKFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGC 546
            F ITN C  T+WP  +   G       GF L + QS++I+VPA  S GR+W RT C+  + + +C TGDC +G L C+ SG   PATLAE+T+ G+   DF+D+S++DGYNL M  +  T  G A  C  +GC
Sbjct:   24 FRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDC-AGALSCTLSGQ--PATLAEYTIGGSQ--DFYDISVIDGYNLAMDFSCST--GVALKCRDSGC 142          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.523e-20
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  154 FTITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWS-GRLWARTHCT-QDSKFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGC 546
            F ITN C  T+WP  +   G       GF L + QS++I+VPA  S GR+W RT C+  + + +C TGDC +G L C+ SG   PATLAE+T+ G+   DF+D+S++DGYNL M  +  T  G A  C  A C
Sbjct:   24 FRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDC-AGALSCTLSGQ--PATLAEYTIGGSQ--DFYDISVIDGYNLAMDFSCST--GVALKCRDANC 142          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.825e-20
Identity = 60/134 (44.78%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  154 FTITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPA-SWSGRLWARTHCTQD--SKFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGC 546
            FTITN CS T+WP      G  QLSP       GQ+ +I+VPA + SGR+W RT C+ D   + +C TGDC +G L C+ SG   P TLAEFT+ G+   DF+D+S++DGYN+ M  +    SG    C  + C
Sbjct:   29 FTITNRCSFTVWPAATPVGGGVQLSP-------GQTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDC-AGALSCTLSG-QKPLTLAEFTIGGS--QDFYDLSVIDGYNVAMSFS--CSSGVTVTCRDSRC 149          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.189e-19
Identity = 58/133 (43.61%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  154 FTITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWS-GRLWARTHCT-QDSKFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGC 546
            F ITN C  T+WP  +   G       GF L + QS++I+VPA  S GR+W RT C+  + + +C TGDC +G L C+ SG   PATLAE+T+ G+   DF+D+S++DG+NL M  +  T  G A  C  A C
Sbjct:   24 FRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDC-AGALSCTLSGQ--PATLAEYTIGGSQ--DFYDISVIDGFNLAMDFSCST--GVALKCRDANC 142          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.495e-17
Identity = 55/133 (41.35%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  154 FTITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASW-SGRLWARTHCT-QDSKFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGC 546
            FTITN C  T+WP  +   G       G  L+ GQ+ +++VPA   SGR+W RT C+      +C TGDC +G L C+ SG   PATLAEF++ G    D++D+S++D YNL M  +  T  G A  C  + C
Sbjct:   24 FTITNNCGYTVWPAAIPVGG-------GQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFNGGSGSCQTGDC-AGALSCTLSG--QPATLAEFSIGGEH--DYYDISVIDVYNLAMDFSCST--GDALQCRDSSC 142          
The following BLAST results are available for this feature:
BLAST of FC878906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TLP_WHEAT1.371e-2145.86Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
RST3_AVESA3.377e-2044.36Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA7.523e-2044.36Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
TLP_ORYSJ9.825e-2044.78Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
RST1_AVESA2.189e-1943.61Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST4_AVESA3.495e-1741.35Thaumatin-like pathogenesis-related protein 4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878906 ID=FC878906; Name=FC878906; organism=Citrus clementina; type=EST; length=814bp
TCAGATTAATCAAGAGTCAAAACCAAACAAACATTTCATTTACACATTTC
TTTCTCTCTTATTACAAATTCAATGGCGGCCCCTATTCAAATTTCTATCG
CCATAACCACCCTCTGTCTTCTCCAATTGCTTTCCGAAACATTGTCAGCG
ACATTCACAATCACAAACGAGTGCAGCAACACAATATGGCCAGGCATACT
CTCAGGCGCAGGAACCCCACAGCTCTCGCCCACTGGCTTCTCCTTGGAGG
CAGGCCAGTCCACTTCGATCTCTGTTCCAGCTTCTTGGTCAGGCCGCCTT
TGGGCCCGCACTCACTGTACCCAAGATTCCAAATTCACTTGCCTGACCGG
CGACTGTGGCTCCGGCACTCTCGAATGCTCCGGCAGTGGCGCCGCCCCTC
CCGCCACCCTAGCTGAATTCACGTTGAACGGCGCAGGCGGCCTTGATTTC
TTCGACGTCAGCCTCGTGGACGGATATAATCTCCCCATGCTGGTCACACC
TCAAACTCAAAGCGGGACCGCTGGCAATTGTACGGCAGCTGGGTGTATTG
CTGAATTGAACAATGCGTGTCCCTCGGAGCTCAAGGTTACAGAGGCCGGC
AATGGTGAGGATGTTGCTTGCAAGAGCGCATGTGAAGCCTTTGGTGACCC
CCAGTACTGCTGCAGTGGAGCTTTCGCGACGCCGGATACTTGTAAACCCA
CTTCTTATTCAATGTTCTTCAAGAATGCGTGCCCTAAAGCTTACAGCTAC
GCTTATGATGATGGTACCAGCACCTTCACCTGTGCCGCTGCCGATTATGT
CATCACTTTCTGTC
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