FC878919

Overview
NameFC878919
Unique NameFC878919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.993e-13
Identity = 43/108 (39.81%), Postives = 53/108 (49.07%), Query Frame = 3
Query:  393 GQNLSLVKVDTASVPEANLQNSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESGL 716
            GQN +       S+   + Q   E +          P  DGYNWRKYGQK VK  +  RSYYKCT  +C  KK       GH+ EI+ KG H+H  P  N   R SG+
Sbjct:  235 GQNKTSDVTTNTSLETVDHQEEEEEQRRGDSMAGGAPAEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKPPPN---RRSGM 339          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.413e-12
Identity = 38/72 (52.78%), Postives = 42/72 (58.33%), Query Frame = 3
Query:  510 DGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESGLISS 725
            DGYNWRKYGQKQVK  +  RSYYKCT+  C  KK       G V EIV +G H+H  P      R S  ISS
Sbjct:  166 DGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSKPSCPLPRRASSSISS 237          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 46/140 (32.86%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  267 VQAAESQTQYQLQPSICPTSLSELSPTSVTEPISS-APSPTLTGQNLSLVKVDTASVPEANLQNSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPP 683
            V++ ES    +L+  + P +++  S   V  P+S  AP  + +   LSL      + P                 I +  + DGYNWRKYGQK VK  +  RSYY+CT+ +C AKK       G V++ V  G H H  P
Sbjct:   47 VESLESTDCKELE-KLVPHTVASQSEVDVASPVSEKAPKVSESSGALSLQSGSEGNSP----------------FIREKVMEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKP 169          
The following BLAST results are available for this feature:
BLAST of FC878919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
WRKY2_ARATH1.993e-1339.81Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK44_ARATH6.413e-1252.78WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRKY1_ARATH9.260e-1132.86WRKY transcription factor 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878919 ID=FC878919; Name=FC878919; organism=Citrus clementina; type=EST; length=873bp
AAAGCGAGAGCTTCGAAGCTCGTAAACGACATGAAAACCCTCAAAACGAC
GAGTTTGAAGAAGAAGAGGAAGAGGAGGATGAGGAAATATTAGACGACGA
AGAAGAAGATGAGGGAGCGAGTCAACTCACTGAGCCACACCAACTGCAAC
TCACCGAGAATAATAAACACCATAAAGGTTTACAAGTGAATTCTGGAGTG
GAATCCAATGAAGGAACTAAACTGAAGGTTGAGGTGTCTCAACATGAAGG
TTCGGGAAGTATAGCGGTCCAGGCTGCTGAATCTCAGACACAATATCAAC
TTCAGCCATCCATATGCCCAACATCCTTATCTGAGCTATCACCTACTTCT
GTTACAGAACCTATATCATCTGCTCCAAGTCCAACTTTAACAGGACAAAA
CCTGTCACTTGTAAAGGTTGATACTGCATCTGTGCCAGAAGCAAACTTGC
AAAACTCTTCTGAGCTGAAAAATGTATCTGTTGTTCATATTGTGAAGACA
CCTGTTTCTGATGGTTACAATTGGCGGAAATATGGCCAAAAACAAGTTAA
GAGTCCTAAAGGTTCTCGAAGCTACTACAAGTGCACATATTCTGATTGTT
GTGCTAAAAAGATTGAATGTTCTGATCACTCAGGTCATGTTATAGAGATT
GTTAATAAAGGCATGCACAGTCATGATCCACCTAGAAAGAATAACTGTGT
GAGGGAAAGTGGGCTCATATCATCTGTTGGACCTGTTATAGGGAATAACA
TTACAGAACAGTCCCTCAGGATGCTTAACGATTCAGTTCCATCAACATCT
TCAAAAGATTCTGTACGAGACTCAAATTTAGTTCCTGAAAGAAAACGGCC
AAACTTAAGTAGCTTTGCTGGGG
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