FC878930
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_VIBCH (Cysteinyl-tRNA synthetase OS=Vibrio cholerae GN=cysS PE=3 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 9.367e-86 Identity = 153/275 (55.64%), Postives = 195/275 (70.91%), Query Frame = 2 Query: 86 LKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 LKIYNS+T+QKE F PIV GKVGMY+CGVT YDL H+GH R VSFD++ RYL +L Y++T+VRN TD+DDKII+RA + E SL+ R QE D L P +PR + ++ +I ++ ++I AYV + GDV F V + YG+LS Q L+ +AG RV +++ KR+P DF LWK +K GEP+W+SPWG GRPGWHIECSAM++ L + FDIHGGG DL FPHHENEIAQSC A V+ WMH+G V + EKMSKSLG+FFT Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYDLTFVRNITDIDDKIIKRAAENAETCESLTERLIQEMYADFDALNIKRPDVEPRATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEAAKRSPLDFVLWKMSKPGEPTWESPWGSGRPGWHIECSAMNSSILGTHFDIHGGGSDLQFPHHENEIAQSCCAHDTQYVNTWMHSGMVMVDKEKMSKSLGNFFT 276
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_VIBC3 (Cysteinyl-tRNA synthetase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=cysS PE=3 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 9.367e-86 Identity = 153/275 (55.64%), Postives = 195/275 (70.91%), Query Frame = 2 Query: 86 LKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 LKIYNS+T+QKE F PIV GKVGMY+CGVT YDL H+GH R VSFD++ RYL +L Y++T+VRN TD+DDKII+RA + E SL+ R QE D L P +PR + ++ +I ++ ++I AYV + GDV F V + YG+LS Q L+ +AG RV +++ KR+P DF LWK +K GEP+W+SPWG GRPGWHIECSAM++ L + FDIHGGG DL FPHHENEIAQSC A V+ WMH+G V + EKMSKSLG+FFT Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYDLTFVRNITDIDDKIIKRAAENAETCESLTERLIQEMYADFDALNIKRPDVEPRATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEAAKRSPLDFVLWKMSKPGEPTWESPWGSGRPGWHIECSAMNSSILGTHFDIHGGGSDLQFPHHENEIAQSCCAHDTQYVNTWMHSGMVMVDKEKMSKSLGNFFT 276
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_DESVV (Cysteinyl-tRNA synthetase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=cysS PE=3 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 9.367e-86 Identity = 152/275 (55.27%), Postives = 194/275 (70.55%), Query Frame = 2 Query: 86 LKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 ++IYNS++++KELFTP VPGKV MY+CG+TAYDL H+GHAR+AV FD+L RYL H +VT+ RNFTDVDDKII+RAN+ G ++ +Y + DM L L +P+ + H+ ++ + ++I AY GDV+F V P YG+LSG+ +++ R+G RVA K +P DFALWK+AK GEPSW SPWG GRPGWHIECSAMS ++ DIHGGG DLIFPHHENEIAQ+ AA V YWMHNG V + EKMSKSLG+F T Sbjct: 1 MQIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDVTFARNFTDVDDKIIKRANEEGLTSQQVAEKYIDTFYEDMDRLNVLRADIEPKATGHILEMIALCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGEEKEDPLDFALWKSAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFPHHENEIAQTEAALDKPFVRYWMHNGFVQVDAEKMSKSLGNFKT 275
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_PYRFU (Cysteinyl-tRNA synthetase OS=Pyrococcus furiosus GN=cysS PE=3 SV=2) HSP 1 Score: 316.235 bits (809), Expect = 1.598e-85 Identity = 150/274 (54.74%), Postives = 187/274 (68.25%), Query Frame = 2 Query: 86 LKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 LK+YN++T+QKE F P+ G+V MY+CG T YD HLGHAR ++FD++ RYLEH Y V V NFTD+DDKII+RA + GE+P L+ R+ + +L DM L+ P PRV+DH+ I + I ++ AY ++F V+K P YG+LSG ++E+ + G RV K+NP DFALWK AK GEP WDSPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIAQS A V YW+H G V EKMSKSLG+F T Sbjct: 2 LKVYNTLTKQKEEFKPLREGEVKMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGYTVLMVMNFTDIDDKIIKRARETGEDPKELAERFIKIFLEDMEALKVKPADIYPRVTDHIDDIIEFIGKLKEKGYAYEGSDGIYFEVKKFPEYGKLSGVKIEDLQKGARVEPGEGKKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIAQSEACFGHEWVKYWLHTGFVMVKGEKMSKSLGNFVT 275
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_THICR (Cysteinyl-tRNA synthetase OS=Thiomicrospira crunogena (strain XCL-2) GN=cysS PE=3 SV=1) HSP 1 Score: 315.849 bits (808), Expect = 2.087e-85 Identity = 153/277 (55.23%), Postives = 197/277 (71.12%), Query Frame = 2 Query: 80 LTLKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 + LKIYN+ T+QKE FTPI P KVG+Y+CGVT YD H+GHAR V FD + R+L L Y+VTYVRN TD+DDKII+RA + E+ SL++R+ D L L P +P+ +++M +I+ MI+ +I D AY E GDV+F V+ +YGRLSG+ +E +G RV ++S K++P DF LWKA+K EP+W SPWG GRPGWHIECSAMS L + FDIHGGG+DL FPHHENEIAQS A + V+ WMH G V ++EKMSKSLG+FFT Sbjct: 1 MALKIYNTETRQKETFTPIQPNKVGLYVCGVTVYDYCHVGHARVMVVFDTVVRHLRSLGYDVTYVRNITDIDDKIIQRALENKESIQSLTSRFIDAMHEDEKALNVLRPDMEPKATEYMDEIETMISTLIEKDFAYPAENGDVYFHVKADDDYGRLSGKNIEELDSGSRVEINSVKKDPLDFVLWKASKENEPAWQSPWGDGRPGWHIECSAMSTKCLGNHFDIHGGGLDLSFPHHENEIAQSECATGEHYVNSWMHCGFVRIDDEKMSKSLGNFFT 277
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_PYRHO (Cysteinyl-tRNA synthetase OS=Pyrococcus horikoshii GN=cysS PE=3 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 2.726e-85 Identity = 152/276 (55.07%), Postives = 186/276 (67.39%), Query Frame = 2 Query: 80 LTLKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 +TL+IYN++T+QKE F PI G+V MY+CG T YD HLGHAR ++FD++ RYLEH Y V V NFTD+DDKIIRRA + GE+P L+ ++ + +L DM L+ P PRV++H+ I I ++ AY V+F V+K YG+LSG +LE R G RV K+NP DFALWK AK GEP W+SPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIAQS A V YW+H G V EKMSKSLG+F T Sbjct: 1 MTLRIYNTLTKQKEEFKPINEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGYSVLMVMNFTDIDDKIIRRAKETGEDPAKLAEKFIKVFLEDMKALKVKPADIYPRVTEHIEDIIQFIERLKEKGYAYEGSDGVYFEVQKFKEYGKLSGVKLEELRKGARVEPGEGKKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIAQSEACFGHEWVHYWLHTGFVMVKGEKMSKSLGNFVT 276
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_MANSM (Cysteinyl-tRNA synthetase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=cysS PE=3 SV=2) HSP 1 Score: 315.079 bits (806), Expect = 3.560e-85 Identity = 156/275 (56.73%), Postives = 186/275 (67.64%), Query Frame = 2 Query: 86 LKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 LKI+N++T++KE F PI P KVGMY+CGVT YDL H GH R VSFD++ RYL +L Y++ YVRN TDVDDKII+RA + E L R E D L L P +PR + H+ +I M+ +I AYV E GDV F VE YG LS Q LE +AG RV + S K+NP DF LWK +K EPSWDSPWG GRPGWHIECSAM+ L + FDIHGGG DL+FPHHENEIAQSC A V+YW+H G +T N EKMSKSL +FFT Sbjct: 2 LKIFNTLTREKEEFKPINPNKVGMYVCGVTVYDLCHFGHGRTFVSFDVITRYLRYLGYDLRYVRNITDVDDKIIKRALENNETCDQLVERMIAEMHKDFDALNILRPDVEPRATKHIPEIIAMVETLIRRGHAYVAEDGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKSVKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNDKELGNHFDIHGGGSDLMFPHHENEIAQSCCAHDGEYVNYWLHTGMLTINEEKMSKSLNNFFT 276
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_DESMR (Cysteinyl-tRNA synthetase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=cysS PE=3 SV=1) HSP 1 Score: 315.079 bits (806), Expect = 3.560e-85 Identity = 149/275 (54.18%), Postives = 195/275 (70.91%), Query Frame = 2 Query: 86 LKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 +++YN+MT+ KE F VPGKV MY+CG+TAYDL H+GHAR++V FD+L RYL H+ ++VT+VRNFTDVDDKII++AN G ++ RY + DM L L P +P+ ++++G++ + ++I++ AY GDV+F V YG+LSG+ +E+ R+G RVA K +P DFALWKA+K GEP W+SP+GPGRPGWH+ECSAMS L DIHGGG DLIFPHHENEIAQS AA YW+HNG V N EKMSKSLG+F T Sbjct: 1 MQLYNTMTRTKEPFVSRVPGKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHIGFDVTFVRNFTDVDDKIIKKANAEGTTSQEIAERYIATFYEDMDKLGILRPNAEPKATEYIGEMASLAQRLIDSGHAYRTPSGDVYFRVRSFAGYGKLSGRDVEDMRSGARVAPGEEKEDPLDFALWKASKPGEPVWESPFGPGRPGWHLECSAMSEKLLGMPIDIHGGGQDLIFPHHENEIAQSEAAIGGEFCRYWVHNGFVRINTEKMSKSLGNFIT 275
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_SHIF8 (Cysteinyl-tRNA synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=cysS PE=3 SV=2) HSP 1 Score: 314.694 bits (805), Expect = 4.649e-85 Identity = 154/275 (56.00%), Postives = 192/275 (69.82%), Query Frame = 2 Query: 86 LKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 LKI+N++T+QKE F PI G+VGMY+CG+T YDL H+GH R V+FD++ RYL L Y++ YVRN TD+DDKII+RAN+ GE+ ++L +R E D L L P +PR + H+ +I ++ Q+I AYV + GDV F V P YG LS Q L+ +AG RV V KRNP DF LWK +K GEPSW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+FPHHENEIAQS A V+YWMH+G V + EKMSKSLG+FFT Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT 276
BLAST of FC878930 vs. ExPASy Swiss-Prot
Match: SYC_SHIBS (Cysteinyl-tRNA synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=cysS PE=3 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 4.649e-85 Identity = 154/275 (56.00%), Postives = 192/275 (69.82%), Query Frame = 2 Query: 86 LKIYNSMTQQKELFTPIVPGKVGMYICGVTAYDLSHLGHARAAVSFDLLYRYLEHLKYEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMGQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGHFFT 907 LKI+N++T+QKE F PI G+VGMY+CG+T YDL H+GH R V+FD++ RYL L Y++ YVRN TD+DDKII+RAN+ GE+ ++L +R E D L L P +PR + H+ +I ++ Q+I AYV + GDV F V P YG LS Q L+ +AG RV V KRNP DF LWK +K GEPSW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+FPHHENEIAQS A V+YWMH+G V + EKMSKSLG+FFT Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT 276 The following BLAST results are available for this feature:
BLAST of FC878930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878930 ID=FC878930; Name=FC878930; organism=Citrus clementina; type=EST; length=907bpback to top |