FC878951

Overview
NameFC878951
Unique NameFC878951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FB193_ARATH (Putative F-box protein At3g44060 OS=Arabidopsis thaliana GN=At3g44060 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13
Identity = 68/262 (25.95%), Postives = 119/262 (45.42%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVE--IYKPNMPD---FSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRAD 905
            ++AV TS+LS RW+ ++    NL F+D +  R +       L  F +FVD  L       I KFSLH + K      L  W+  A+   V E+ ++L      E       +P  ++NS TL  L L +     S       P +K   ++  +++ +       + CP LEDL+I ++ +        ISS+++K+L+L +      A  +  T++ P +  L+ +D    +  ++ L SL    LD+ +    +  V+ D
Sbjct:   19 KEAVSTSVLSKRWRTLFTRSDNLDFHDPISGRPE-----DILKSFNDFVDSSLAFQGGKHIKKFSLHTKIKTFEYHVLDRWICNALEHGVSELHLHL----MHESWPWLFSIPSKVFNSSTLVKLSLGSRLYCPSFPPDTSLPALKVLLLDSILFRDDQLSNVFLAACPALEDLTIHHTYH-----PCVISSKSIKKLSLSVNSGYYGAG-YILTLDTPSVVDLYYSDSPRHNAPLFHLDSLAKVTLDLHFIENNNREVQND 265          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBL65_ARATH (F-box/LRR-repeat protein At3g59210 OS=Arabidopsis thaliana GN=At3g59210 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.389e-12
Identity = 69/263 (26.24%), Postives = 118/263 (44.87%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVE--IYKPNMPDF----SICPVLEDLSIDYSLNFDWDA--DISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVR 899
            ++A  TS+LS RW+ ++A +PNL F+       +    +   T F +FVDR+L L     I+KFSL C            W+   +   V ++ +++     +        LP  ++ S+TL  LK+      +     +C P++K  +++  +++     F    S CPVLE+LS+   LN  WD     S+SS+ LKRL L         N    + + P + +   +D     Y      SL +A + I  ++V+    R
Sbjct:   27 KEAALTSLLSKRWRYLFALVPNLDFDVLPSLHPEVAMQDQDQTSFIDFVDRVLKLRGKDHINKFSLKCGDGIEDEDVFP-WILNTLRHGVSDLSLHVSPSLVY-------WLPSKVFASKTLVRLKIGPKDGPRVKLRNVCLPKLKTLNLDSVVFEEGKIGFAKLLSGCPVLEELSL---LNLAWDRWDSCSVSSKILKRLTLYCAHS--SRNPKSVSFDTPNVVYFEYSDNIANKYPKVNFDSLVEASIGIRMTKVQKANAR 276          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FDL24_ARATH (Putative F-box/FBD/LRR-repeat protein At4g00315 OS=Arabidopsis thaliana GN=At4g00315 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.369e-12
Identity = 71/235 (30.21%), Postives = 111/235 (47.23%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRY--LSRLK-----FWVALAIM-RNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPD-----FSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVND 803
            +DAVRTS+LS RWK +W  LP L ++    +R    S+   L RF      +L   + +I   SL    K RY  +  +K      WV+LA+   NV E+ + L     F E   P +LP  +Y  +++ ILKL+ + +   P   +C P +K   +     +  D      S CPVLEDL ++     D    +S+  ++L+RL L +  P    +     +  P L++L V D
Sbjct:   22 KDAVRTSLLSMRWKSLWMWLPKLEYD----FRHYSVSEGQGLARFITL--SLLGHKAPAIESLSL----KLRYGAIGSIKPEDIYLWVSLAVHDSNVRELSLKLCT---FAE--RPTKLPKSLYKCKSIVILKLKDEILVDVPRK-VCLPSLKTLFLGRVTYSDEDSLHRLLSNCPVLEDLVVERD-RIDNLGKLSVVVKSLQRLTLKMSCP---CHLDGIMMNTPSLKYLKVTD 236          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FDL32_ARATH (Putative F-box/FBD/LRR-repeat protein At5g22670 OS=Arabidopsis thaliana GN=At5g22670 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.001e-12
Identity = 74/258 (28.68%), Postives = 111/258 (43.02%), Query Frame = 3
Query:  144 AVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVEL-PDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFH-VEIYKPN----MPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGP---IVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRS 887
            AVRTS+LS RWK    S+P L FN          S+      F   V   L  S    I K  L  +KK    S L  W+  A+ R V  +++           Y   EL P  +Y  ETL  L+L    V       +  PR+K  H ++   PN        S CPVLEDL++   +  +    + + S +LK L L + G     +  +  +  I+AP+L +L + D    S+++  + S     +D+ +  VRS
Sbjct:   33 AVRTSVLSKRWKRFSLSVPLLEFN---------VSEFHGYYEFARVVHGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVKRKVQHLDIG-------RWSYLGQELIPHSLYTCETLVSLRLHN--VSLPDFDHVSLPRLKTMHLIDNIYPNDALLENLISSCPVLEDLNVSRDVE-NIVKVLRVRSLSLKSLILALDGDRYGDIEDDSWEVVIDAPRLSYLSLRDDQSKSFVLSSVTSPAKVDIDVTFDVVRS 271          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBL32_ARATH (F-box/LRR-repeat protein At1g55660 OS=Arabidopsis thaliana GN=At1g55660 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.535e-11
Identity = 68/239 (28.45%), Postives = 111/239 (46.44%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQK------KPRYLSRLKFWVALAI-MRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPD-----FSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVS 818
            +DAV TSILS RWK +W  LP L +N    +R    S+   L RF      + +  + +I   SL  +       KP+    +  WV+LA+ + NV E+ + L     F     P +LP  +   +++ ILKL+ + +   P   +C P +K   +     +  +      S CPVLEDL ++     D    +S+  ++L+RL L +  P    +     + +P L++L V D  L S
Sbjct:   73 KDAVSTSILSMRWKSLWMWLPKLEYN----FRHYSVSEGQGLARF--ITSSLRVHKAPAIESLSLKFRYGAIGSIKPK---DIYLWVSLAVHVSNVRELSLKL-----FNFAELPTKLPKSLCKCKSIVILKLKDEILVDVPRK-VCLPSLKTLFLGRVTYSDANSLHRLLSNCPVLEDLVMERD-KIDNLGKLSVIVKSLQRLTLKMSRP---CHLDGLKMNSPSLKYLKVIDERLES 292          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FB65_ARATH (Putative F-box protein At1g58310 OS=Arabidopsis thaliana GN=At1g58310 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.535e-11
Identity = 67/261 (25.67%), Postives = 119/261 (45.59%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSI------CPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVR 899
            ++A  TS+L+ +W+ ++AS+PNL F+D +  R      N A++      D++L L ++  + KFSL  +     + R+  W+   + R V ++E+++ +            LP  I+ SETL  LKL  +         +  P++K  H+   K       +      C +LE+L+++Y     WD  +S+S  TLKRL    G  +   N    +   P L +L   D     Y      SL +A +++  S  + +  R
Sbjct:   28 KEAASTSVLAKKWRYLFASVPNLDFDDSVHLRLG--KRNPAVS------DQVLRLQDNSPLHKFSLKIRDCVD-IVRIICWILKVLERGVSDLELDMHLK-------WKSSLPSKIFLSETLVRLKLSVERGPFIDVEDVHLPKLKTLHIVSVKFEKHGIGLNKLLSGCHILEELNLEYISWCLWDF-VSVSLTTLKRLT-FCGEVMQDENPISVSFNTPNLVYLMFTDAIADEYSTVNFDSLVEAHINLQMSEDQVEQTR 270          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBL63_ARATH (F-box/LRR-repeat protein At3g59190 OS=Arabidopsis thaliana GN=At3g59190 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.005e-11
Identity = 70/253 (27.67%), Postives = 110/253 (43.48%), Query Frame = 3
Query:  141 DAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGAL---TRFENFVDR-MLLSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK-------PNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDI 866
            +A  TS+L+ RW+ + A +PNL   D + Y R        L     F+ FVDR M L  +  + KFSL C K     SR+  WV   + R V E+++ +  +      YE   LP  +  ++TL  LK+     F         P++K  H+           P     S C  LE+L +   + +D+    S+SS +LKR++  I    +  N    + + P L +L   D   V Y      SL +A + +
Sbjct:   33 EAASTSVLAKRWRFLLAFVPNLDL-DNMIYDRPKMGRRKRLELRKSFKLFVDRVMALQGNAPLKKFSLRC-KIGSDPSRVNGWVLKVLDRGVEELDLYIASE------YE-YPLPPKVLMTKTLVSLKVSGTDEFTIDVGEFFLPKLKTLHLSAISFGDEGGPPFAKLISACHALEEL-VMIKMMWDYWEFCSVSSPSLKRVS--IDCENIDENPKSVSFDTPNLVYLEFTDTVAVKYPKVNFDSLVEASIGL 273          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBD20_ARATH (Putative FBD-associated F-box protein At5g53640 OS=Arabidopsis thaliana GN=At5g53640 PE=4 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.619e-11
Identity = 70/244 (28.69%), Postives = 108/244 (44.26%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSV-SISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVE--IYKPNMPDF----SICPVLEDLSIDYSLNFDWDADI-SISSQTLKRLNL-MIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHS 842
            +D V+TS+LS+RW+ +W  +P+L  + +         D      F +F DR   SN V  I+K  L   +       LK W+  A  R +  ++V       F   +  +     +Y  E L  L+L    V         FP +K  H+E  +Y PN   F    S CPVLEDL++   + +  D  +  + SQ+LKR +L  +   +         I+AP L  L +ND    S++V  L S
Sbjct:   42 KDVVKTSVLSTRWRSLWLLVPSLELDSR---------DFSDFNTFVSFCDRYFDSNRVLCINKLKLTISENEEDGFYLKSWIDAAAKRKIQHLDVQ------FLPQFHKIHFN--LYKCEALVSLRLFE--VSLDKGRIFSFPCMKTMHLEDNVY-PNEATFKELISCCPVLEDLTV---IIYGMDRKVFQVHSQSLKRFSLKRVSSFLHEVALSGVVIDAPLLCSLRINDNVSKSFIVNNLGS 262          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FB69_ARATH (F-box protein At1g60400 OS=Arabidopsis thaliana GN=At1g60400 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.619e-11
Identity = 59/259 (22.78%), Postives = 112/259 (43.24%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDF-----SICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPV 896
            +D+VRTS+LS  W+ +W  +P L            TSD      F  F+DR +     + +  F +       +     + +   + R V ++ V    ++P+    + V++P  +Y+  TL  L L    +   PS  +C PRVK  ++   K +         S C VLEDL++  +   D++  +   SQ++K   +          +    I+ P+LE++ + +    S++V+ +       +DI +     DP+
Sbjct:   34 KDSVRTSVLSKHWRNLWLHVPVLELE---------TSDFPDNLVFREFIDRFVGFDKEIDLKSFDIFYDVNVLWYDDFLWMIDDVVKRRVCDLMVT---NNPYVVNEKLVKMPISLYSCATLVNLNLSFVAMNNLPSESVCLPRVKTLYLHGVKLDGDSILGTLVSSCSVLEDLTV-VTHPGDYEKVVCFRSQSVKSFTIESQCEY---KDPNVEIDCPRLEYMCIREYQSESFVVHSIGPYAKVDVDIFFEVEYEDPL 276          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBD17_ARATH (FBD-associated F-box protein At5g38590 OS=Arabidopsis thaliana GN=At5g38590 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.420e-11
Identity = 67/233 (28.76%), Postives = 110/233 (47.21%), Query Frame = 3
Query:  144 AVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIY-----KPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYL 824
            AV TSILS RW+ +W  LPNL +  + C R+ G  D G      +F+ + L L  +  I     H          ++ W+ +A+ R+VH++++     D F E  E + L    +  ++L  LKL +  +   PS  +C P +K   ++       K      SICPVLEDLS+ Y  +++   +++I   +L  L+L I    +        I+ P LE+L + D     +L
Sbjct:   24 AVSTSILSKRWEFLWMWLPNLDYTSRWC-RKPG--DVG----LRDFIHKNLPLHRAPVIESLRFHSNSPDIKPEDIRRWIEIAVSRHVHDLDI-----DHFSEN-ENIFL-SSFFACKSLVTLKLRSVTLRDIPSM-VCLPSLKTLLLDNVSFVEGKSLQELLSICPVLEDLSV-YCDDYENTKELTIVVPSLLSLSLYIPDEWLLDG---YWIDTPSLEYLKLEDWNSCDHL 237          
The following BLAST results are available for this feature:
BLAST of FC878951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
FB193_ARATH8.141e-1325.95Putative F-box protein At3g44060 OS=Arabidopsis th... [more]
FBL65_ARATH1.389e-1226.24F-box/LRR-repeat protein At3g59210 OS=Arabidopsis ... [more]
FDL24_ARATH2.369e-1230.21Putative F-box/FBD/LRR-repeat protein At4g00315 OS... [more]
FDL32_ARATH9.001e-1228.68Putative F-box/FBD/LRR-repeat protein At5g22670 OS... [more]
FBL32_ARATH1.535e-1128.45F-box/LRR-repeat protein At1g55660 OS=Arabidopsis ... [more]
FB65_ARATH1.535e-1125.67Putative F-box protein At1g58310 OS=Arabidopsis th... [more]
FBL63_ARATH2.005e-1127.67F-box/LRR-repeat protein At3g59190 OS=Arabidopsis ... [more]
FBD20_ARATH2.619e-1128.69Putative FBD-associated F-box protein At5g53640 OS... [more]
FB69_ARATH2.619e-1122.78F-box protein At1g60400 OS=Arabidopsis thaliana GN... [more]
FBD17_ARATH3.420e-1128.76FBD-associated F-box protein At5g38590 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DD10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878951 ID=FC878951; Name=FC878951; organism=Citrus clementina; type=EST; length=912bp
AAAAAAATCAAATTGAAGGAAATTTTGAAACCCGTCGCAGCCAGAGACCG
GCTCGTCGTCGCCTGCGGCCTAGCCTTCCGTGAAAATAGAGTTGGTTGAT
AACTTTCACGATGAATAACTCAAAATCACGTAAAGTTGAAGATGCTGTTC
GAACTAGCATTTTATCTTCAAGATGGAAGCTTGTTTGGGCTTCTCTTCCC
AATCTTATGTTCAATGACAAGTTATGCTACAGACGTGATGGTACTTCAGA
TAATGGTGCGTTGACGAGGTTTGAGAATTTTGTCGACAGGATGCTTCTGT
CCAACTCAGTAAGCATTAGCAAGTTTTCCCTTCATTGTCAGAAGAAGCCC
AGGTATTTGTCTCGTCTGAAATTCTGGGTTGCACTTGCAATTATGCGAAA
TGTTCATGAGATCGAAGTTAATCTTCCGGTTGACGATCCATTTGAAGAGG
GTTACGAGCCTGTTGAGCTACCTGACTGCATCTACAATTCTGAAACACTT
GAAATTTTGAAACTAGAAACAGATTTTGTATTCAAGAGTCCTTCCTCTGG
GATATGTTTTCCAAGGGTCAAGAAATTTCATGTTGAAATATATAAGCCCA
ACATGCCTGACTTTTCTATTTGTCCTGTACTTGAAGATTTGTCAATTGAC
TACTCGCTAAATTTTGATTGGGACGCCGATATTAGCATTTCGTCTCAAAC
TCTAAAGAGGTTAAACTTGATGATAGGGGGACCTATTGTCTTTGCTAATG
AGCACCAGGCTACGATTGAGGCTCCAAAACTTGAACACCTCCATGTTAAT
GATGGCACATTGGTATCTTATCTGGTCTATGAGTTACATTCATTATGTGA
TGCACGCCTTGATATTGACTATTCGCGTGTGCGTAGTGATCCGGTTCGAG
CTGATCATGCAC
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