FC878951

Overview
NameFC878951
Unique NameFC878951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBL88_ARATH (Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.467e-11
Identity = 70/280 (25.00%), Postives = 121/280 (43.21%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCY--RRDGTSDNGALTRFENFVDRML---LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLE-TDFVFKSPSSGICFPRVKKFHVEIYKPNMPD----FSICPVLEDLSIDYSLNFDWDAD----ISISSQTLKRLNL-----MIGGPIVFANEH---------QATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDP 893
            ++A  T++L+ RWK + A +PNL F+D + +  R      + +   F +FVD +L         + +F + C+      S +  W+   + R V +I++++     + E      LP  I+ S+TL  LK++  D V      G+  P++K  H++ +K          S C  LE+L +   +  D   D    +S+S  TLKRLN         G   F  ++           + + P L +L  +D  +  Y      SL +A L     R+R  P
Sbjct:   34 KEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARRNKYSKSYESFMSFVDSVLALQAKTKTPLKRFHVKCEDVVDQ-SWVLEWIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVEGGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLANLMWADSSEDEACHVSVSIPTLKRLNFCRSEDFYEGEFHFYEDYDEENINEGVSLSFDNPNLVYLEYSDVIVDKYKQVSFDSLVEANL-----RLRKTP 307          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FB207_ARATH (Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.834e-11
Identity = 70/255 (27.45%), Postives = 117/255 (45.88%), Query Frame = 3
Query:  126 SRKVEDAVRTSILSSRWKLVWASLPNLMFNDK-LCYRRDGTSD-NGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFS----ICPVLEDLSIDYSLNFDW-DADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDI 866
            S   ++A  TS+L+ +W+ ++A +P+L FND    + ++G  + +G L  F +FVDR+L L  +  I KFSL+  K      R+  W+   + R V  + + +     FEE Y    LP  I  S+TL  LK             +  P +K   +E  +     F      CPVLE+L +   LN +W D ++ +SS +LK L +      +       + + P L  L   D     Y +  L +L +  +++
Sbjct:   23 SLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKREKDGILRSFMDFVDRVLALQGASPIKKFSLNV-KTGVDPDRVDRWICNVLQRGVSHLALFM----DFEEEY---SLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTLVLESVEFGRGQFQTLLPACPVLEELML---LNMEWKDRNVILSSSSLKNLKITSEDGCL----GTLSFDTPNLVFLDYYDYVAEDYPIVNLKNLVEVGINL 262          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FB268_ARATH (Putative F-box protein At5g38390 OS=Arabidopsis thaliana GN=At5g38390 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.620e-11
Identity = 70/264 (26.52%), Postives = 120/264 (45.45%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSI----CPVLEDLSIDYSLNFDWD----ADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDI-----DYSRVRS 887
            ++A  TS+LS RW+ + A +PN+              D+     F +FVDR+L L  +  I+KFSL C        R+  W+   ++R V E+ +++ VD  FE+ Y     P    N    +++KL   ++     S I  P +K   +E    ++  F I     P LE+L ++   N  W      D+ +SS++LK L +           H  + + P L +L  +   +  Y   ++ +L +AR+ +     D SRVR+
Sbjct:   22 KEAALTSVLSKRWRNLIAFVPNV-----------DIVDHDIRELFMDFVDRVLALQGNSPINKFSLDCSGVDS--DRVDCWIQNVMVRGVSELNLSIFVDSVFEDDYN--LFPKVFENK---KLVKLGLSYISWLDGS-IFLPMLKTLVLESVLLSVEKFEILLHALPALEELVMN---NIYWKERDVVDLIVSSESLKTLTINF-----IVCTHTLSFDTPILAYLSYSGYVVDDYAEAKMENLFEARISLLVVEGDISRVRA 258          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBL61_ARATH (Putative F-box/LRR-repeat protein At3g59160 OS=Arabidopsis thaliana GN=At3g59160 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.951e-11
Identity = 74/287 (25.78%), Postives = 120/287 (41.81%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDN-------------------GALTRFENFVDRML-LSNSVSISKFSLHC--QKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPD------FSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQ-----ATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVR 899
            ++A  TS+LS RW+ + A +PNL F+D     RD    N                      T F +FVDR+L L  +  + KFSL       P     +  W+   ++R V ++ + + ++       E   LP  I+ +ETL  L L+           +  P++K  H+E    +  D       S CP LE+L + +  +  W    S+S  TLKRL       + F   H+      + + P L +L   +    +Y      SL +A++DI  +  + D VR
Sbjct:   33 KEAASTSLLSRRWRYLLAFVPNLEFDDSAYLHRDKRVKNPLHEKGLVGFVLTVDDKRKKLSTSFPDFVDRILDLQGNSPLDKFSLKMVDDHDPVDPDCVAPWIHKVLVRGVSDLHLVIDMN-------EWTSLPAKIFLTETLVKLTLKIRDGPPIDVKHVHLPKLKTLHLESVMFDEEDIGFSKLLSGCPELEELVLHHIWSCVW-TSCSVSVATLKRLTFCCNN-MKFCGMHEENPNNVSFDTPNLVYLEYAEVIANNYPKVNFDSLVEAKIDIWMTNDQLDEVR 310          
The following BLAST results are available for this feature:
BLAST of FC878951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
FBL88_ARATH4.467e-1125.00Putative F-box/LRR-repeat protein At5g41840 OS=Ara... [more]
FB207_ARATH5.834e-1127.45Putative F-box protein At3g58860 OS=Arabidopsis th... [more]
FB268_ARATH7.620e-1126.52Putative F-box protein At5g38390 OS=Arabidopsis th... [more]
FBL61_ARATH9.951e-1125.78Putative F-box/LRR-repeat protein At3g59160 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DD10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878951 ID=FC878951; Name=FC878951; organism=Citrus clementina; type=EST; length=912bp
AAAAAAATCAAATTGAAGGAAATTTTGAAACCCGTCGCAGCCAGAGACCG
GCTCGTCGTCGCCTGCGGCCTAGCCTTCCGTGAAAATAGAGTTGGTTGAT
AACTTTCACGATGAATAACTCAAAATCACGTAAAGTTGAAGATGCTGTTC
GAACTAGCATTTTATCTTCAAGATGGAAGCTTGTTTGGGCTTCTCTTCCC
AATCTTATGTTCAATGACAAGTTATGCTACAGACGTGATGGTACTTCAGA
TAATGGTGCGTTGACGAGGTTTGAGAATTTTGTCGACAGGATGCTTCTGT
CCAACTCAGTAAGCATTAGCAAGTTTTCCCTTCATTGTCAGAAGAAGCCC
AGGTATTTGTCTCGTCTGAAATTCTGGGTTGCACTTGCAATTATGCGAAA
TGTTCATGAGATCGAAGTTAATCTTCCGGTTGACGATCCATTTGAAGAGG
GTTACGAGCCTGTTGAGCTACCTGACTGCATCTACAATTCTGAAACACTT
GAAATTTTGAAACTAGAAACAGATTTTGTATTCAAGAGTCCTTCCTCTGG
GATATGTTTTCCAAGGGTCAAGAAATTTCATGTTGAAATATATAAGCCCA
ACATGCCTGACTTTTCTATTTGTCCTGTACTTGAAGATTTGTCAATTGAC
TACTCGCTAAATTTTGATTGGGACGCCGATATTAGCATTTCGTCTCAAAC
TCTAAAGAGGTTAAACTTGATGATAGGGGGACCTATTGTCTTTGCTAATG
AGCACCAGGCTACGATTGAGGCTCCAAAACTTGAACACCTCCATGTTAAT
GATGGCACATTGGTATCTTATCTGGTCTATGAGTTACATTCATTATGTGA
TGCACGCCTTGATATTGACTATTCGCGTGTGCGTAGTGATCCGGTTCGAG
CTGATCATGCAC
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