FC878953

Overview
NameFC878953
Unique NameFC878953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 7.977e-51
Identity = 106/205 (51.71%), Postives = 132/205 (64.39%), Query Frame = 1
Query:  247 PLERAASARRSLLEVGTELRSLRLRHA------------SGPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISL---------GGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL +  S RR++ E    +  L  +               GP PE L NY+DAQY+G I +GTPPQ F VVFDTGS+NLWVPS  C   +IAC  H KY+S KSS+Y  NGT F I YGSGSLSG+LS D +S+         GG+TV+ QTF EAI +PG+ F+AAKFDGILGM +  I+V+ V PVFDN++ Q LV + VFSF
Sbjct:    5 PLHKFTSIRRTMSEAAGXVXXLIAKGPISKYATGEPAVRQGPIPELLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDKNVFSF 209          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.042e-50
Identity = 107/205 (52.20%), Postives = 135/205 (65.85%), Query Frame = 1
Query:  247 PLERAASARRSLLEVGTELRSLRLR------------HASGPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISL---------GGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL +  S RR++ EVG  +  L L+              + P  E L NYLDAQY+G I +GTPPQ F VVFDTGSSNLWVPS  C   +IAC +H+KY+S KSS+Y  NGT+F I YGSGSLSG+LS D +S+          GI V++Q F EA  +PG+ FVAAKFDGILGMG+  I+V+ V PVFDN++ Q LV + +FSF
Sbjct:   25 PLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPKTTEPVSELLKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGILGMGYPHISVNNVLPVFDNLMQQKLVDKNIFSF 229          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.321e-50
Identity = 100/166 (60.24%), Postives = 122/166 (73.49%), Query Frame = 1
Query:  331 GPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLST-DQIS---------LGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            GP PE L NY+DAQY+G I +GTPPQ F VVFDTGSSNLWVPS  C   +IAC +H+KY+S KSS+Y  NGT FAI YGSGSLSG+LS+ D +S         +GGI V+ QTF EA  +PGL F+AAKFDGILGM +  I+V+ V PVFDN++ Q LV + +FSF
Sbjct:    1 GPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTTFAIHYGSGSLSGYLSSQDTVSVPCNSALSGVGGIKVERQTFGEATKQPGLTFIAAKFDGILGMAYPRISVNNVVPVFDNLMQQKLVDKDIFSF 166          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 6.753e-50
Identity = 92/150 (61.33%), Postives = 117/150 (78.00%), Query Frame = 1
Query:  349 LSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            L NY+DAQYFG I +GTPPQ F V+FDTGSSNLWVPS KC+++ +AC+ H+KY S+ S++Y+ NG + AIQYG+GS+SGF S D + LG + VKEQ F EA  EPG+ F+AAKFDGILG+GF  I+V    PV+  M+ QGLVQ+PVFSF
Sbjct:   43 LKNYMDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFS-VACLFHSKYRSTDSTTYKKNGKSAAIQYGTGSISGFFSQDSVKLGDLLVKEQDFIEATKEPGITFLAAKFDGILGLGFQEISVGDAVPVWYTMLNQGLVQEPVFSF 191          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CARP_NANOT (Vacuolar protease A OS=Nannizzia otae (strain CBS 113480) GN=PEP2 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.751e-49
Identity = 91/150 (60.67%), Postives = 117/150 (78.00%), Query Frame = 1
Query:  349 LSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            + N+L+AQYF  I++GTPPQ+F+VV DTGSSNLWVP K C  ++IAC LH+ YDSS SS++  NGT+FAI+YGSGSL GF+S D + +G + +K Q FAEA SEPGLAF   +FDGILGMG+ +I+V+ + P F  MV QGLV +PVFSF
Sbjct:   79 IDNFLNAQYFSEISIGTPPQTFKVVLDTGSSNLWVPGKDC--SSIACFLHSTYDSSASSTFTRNGTSFAIRYGSGSLEGFVSQDNVQIGDMKIKNQLFAEATSEPGLAFAFGRFDGILGMGYDTISVNKITPPFYKMVEQGLVDEPVFSF 226          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.274e-48
Identity = 100/188 (53.19%), Postives = 127/188 (67.55%), Query Frame = 1
Query:  247 PLERAASARRSL--LEVGTELRSLRLRHASGPSPE--PLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL+R     R L  L    +L  L     SG +P   PLS +++ QYFG I LGTPPQ+F VVFDTGSSNLWVPS +CH+ ++AC  H++++   SSS+R NGT FAIQYG+G LSG LS D +++GGI     TF EA+ EP L F  A FDGILG+GF ++AV  V P  D MV QGL+++PVFSF
Sbjct:   27 PLQRIHLGHRILNPLNGWEQLAELSRTSTSGGNPSFVPLSKFMNTQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFAIQYGTGRLSGILSQDNLTIGGIHDAFVTFGEALWEPSLIFALAHFDGILGLGFPTLAVGGVQPPLDAMVEQGLLEKPVFSF 214          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CARP_ASPFU (Vacuolar protease A OS=Aspergillus fumigatus GN=pep2 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.274e-48
Identity = 91/150 (60.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query:  349 LSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            + N+L+AQYF  I+LGTPPQ F+VV DTGSSNLWVP   C  ++IAC LHNKYDSS SS+Y+ANGT FAI+YGSG LSGF+S D + +G + V +Q FAEA +EPGLAF   +FDGILG+G+ +I+V+ + P F NM+ QGL+ +PVF+F
Sbjct:   77 VDNFLNAQYFSEISLGTPPQKFKVVLDTGSSNLWVPGSDC--SSIACFLHNKYDSSASSTYKANGTEFAIKYGSGELSGFVSQDTLQIGDLKVVKQDFAEATNEPGLAFAFGRFDGILGLGYDTISVNKIVPPFYNMLDQGLLDEPVFAF 224          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CARP_YEAST (Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.705e-48
Identity = 90/151 (59.60%), Postives = 117/151 (77.48%), Query Frame = 1
Query:  346 PLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL+NYL+AQY+  ITLGTPPQ+F+V+ DTGSSNLWVPS +C   ++AC LH+KYD   SSSY+ANGT FAIQYG+GSL G++S D +S+G +T+ +Q FAEA SEPGL F   KFDGILG+G+ +I+VD V P F N + Q L+ +  F+F
Sbjct:   82 PLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG--SLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAF 230          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: RENI_CANFA (Renin OS=Canis familiaris GN=REN PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.839e-48
Identity = 99/191 (51.83%), Postives = 130/191 (68.06%), Query Frame = 1
Query:  250 LERAASARRSLLEVGTELRSL---------RLRHASGPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFS 795
            L++  S R SL E G ++  L         RL   +  SP  L+NYLD QY+G I +GTPPQ+F+VVFDTGS+NLWVPS +C     AC +H  YDSS+SSSY  NGT F I+YGSG + GFLS D +++GGITV  QTF E    P + F+ AKFDG+LGMGF + AV  V PVFD++++QG++++ VFS
Sbjct:   35 LKKMPSIRESLKERGVDVAGLGAEWNQFTKRLSSGNSTSPVVLTNYLDTQYYGEIGIGTPPQTFKVVFDTGSANLWVPSTRCSPLYTACEIHCLYDSSESSSYMENGTTFTIRYGSGKVKGFLSQDMVTVGGITV-TQTFGEVTELPLIPFMLAKFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEEVFS 224          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.839e-48
Identity = 97/190 (51.05%), Postives = 123/190 (64.74%), Query Frame = 1
Query:  247 PLERAASARRSLLEVGTELRSLRLRHASGPSPE------PLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL R    RR L  +        L     PSP       PLSNY D QYFG I LGTPPQ+F V FDTGSSNLWVPS++CH+ ++ C LH+++D   SSS++ANGT FAIQYG+G + G LS D++++GGI      F EA+ EP L F  A FDGILG+GF  ++V+ V P  D +V QGL+ +PVFSF
Sbjct:   30 PLHRVQPGRRILNLLRGWREPAELPKLGAPSPGDKPIFVPLSNYRDVQYFGEIGLGTPPQNFTVAFDTGSSNLWVPSRRCHFFSVPCWLHHRFDPKASSSFQANGTKFAIQYGTGRVDGILSEDKLTIGGIKGASVIFGEALWEPSLVFAFAHFDGILGLGFPILSVEGVRPPMDVLVEQGLLDKPVFSF 219          
The following BLAST results are available for this feature:
BLAST of FC878953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
CATD_BOVIN7.977e-5151.71Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_MOUSE1.042e-5052.20Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_PIG2.321e-5060.24Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
CYPR1_CYNCA6.753e-5061.33Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
CARP_NANOT9.751e-4960.67Vacuolar protease A OS=Nannizzia otae (strain CBS ... [more]
NAPSA_MOUSE1.274e-4853.19Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CARP_ASPFU1.274e-4860.67Vacuolar protease A OS=Aspergillus fumigatus GN=pe... [more]
CARP_YEAST3.705e-4859.60Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4... [more]
RENI_CANFA4.839e-4851.83Renin OS=Canis familiaris GN=REN PE=2 SV=1[more]
NAPSA_HUMAN4.839e-4851.05Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA87BA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87BA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878953 ID=FC878953; Name=FC878953; organism=Citrus clementina; type=EST; length=798bp
CACGCACGAGACAATTTCAATAAATAAATAGCAGTCACAACGAAGGCGAC
GGACAGTTCGCTTCGGAGAGAGCTTCGAGAATCTCTTCGCAACTACTTGT
AAAAAATAGTGTCGCATTTTGTCTGAACTTTGCGAATACAAAGACAATTT
TGTAGAACAGTTCGTAAGAAGGGCAGCATGAGTCGCCTGTCCCTGTTGTT
GGTGGTGGCGGTGGCGGCGAGCTGCGCCTCGGCTCTCGTCAGGGTGCCGC
TGGAGCGCGCGGCGTCGGCCCGGCGCTCGCTGCTGGAGGTGGGCACGGAG
CTCCGCTCGCTACGCCTGCGACACGCTTCAGGGCCTTCGCCTGAGCCACT
CTCCAACTACCTCGATGCGCAGTACTTCGGCCCCATAACGCTGGGCACGC
CGCCGCAGTCGTTCCGCGTGGTGTTCGACACCGGCTCCTCCAACCTCTGG
GTGCCCTCCAAGAAGTGCCACTACACCAACATCGCCTGCATGCTCCACAA
CAAATATGACAGCAGCAAGTCGAGCAGCTACCGCGCCAACGGCACCGCCT
TCGCCATCCAGTACGGCTCCGGCAGCCTCTCCGGGTTCCTCTCCACCGAC
CAGATCTCCCTGGGCGGCATCACGGTGAAGGAGCAGACGTTCGCGGAGGC
CATCTCGGAGCCGGGGCTCGCCTTCGTGGCCGCCAAGTTCGACGGCATCC
TCGGCATGGGCTTCAGCAGCATCGCCGTGGACTGCGTGCCGCCCGTGTTC
GACAACATGGTGGCGCAGGGGCTGGTGCAGCAGCCCGTGTTCTCGTTC
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