FC878986

Overview
NameFC878986
Unique NameFC878986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: ATG18_PICPA (Autophagy-related protein 18 OS=Pichia pastoris GN=ATG18 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  538 TGFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            TG + V    +   ++NQD  C + G   G++I+N EPF +     L      IVEMLF  +++A+VG G+     P K+ +++  +   I E  F + + +VK++RER+VV+L
Sbjct:   12 TGNAQVTHESINFANFNQDSTCVSVGYQSGYKIFNVEPFTKCL--SLADTSIGIVEMLFSSSLVAIVGLGELPDSSPRKLKVFNTKRRSIICELTFPTSILAVKMNRERMVVLL 123          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: ATG18_CHAGB (Autophagy-related protein 18 OS=Chaetomium globosum GN=ATG18 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  547 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            +D+   +L  V++NQD+ C A  TS GFRIY+ +PF + F  D   G   I+EMLF  +++A+V +       P  ++I +  +   I +  F + V +V+L+R+ + VVL
Sbjct:    2 ADLSNTKLNYVTFNQDHSCLAVATSRGFRIYHTDPFSKIFNSD--EGNVTIIEMLFSTSLVAMVRS-------PRHLVIQNTKRGSIICDLTFPTAVLAVRLNRKTLAVVL 103          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: ATG18_BOTFB (Autophagy-related protein 18 OS=Botryotinia fuckeliana (strain B05.10) GN=atg18 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  577 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            V++NQDY C A GT+ GFRIY+ EPF + F  D  +    I+EMLF  +++A+       +  P  ++I +  +   I E  F S V +V+L+R+R  V+L
Sbjct:    4 VTFNQDYSCLAVGTAKGFRIYHTEPFSKIFTGD--NENVTIIEMLFSTSLVAI-------KQSPRHIVIQNTKRGTVICELTFPSAVLAVRLNRKRFAVLL 95          
The following BLAST results are available for this feature:
BLAST of FC878986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ATG18_PICPA2.479e-1133.33Autophagy-related protein 18 OS=Pichia pastoris GN... [more]
ATG18_CHAGB9.419e-1134.23Autophagy-related protein 18 OS=Chaetomium globosu... [more]
ATG18_BOTFB9.419e-1137.62Autophagy-related protein 18 OS=Botryotinia fuckel... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878986 ID=FC878986; Name=FC878986; organism=Citrus clementina; type=EST; length=879bp
CTCTCACAAAGCGAAAGAGAAAATTTGATCTGATGATCATTAATTTGATT
TCTCATATCACAGCATCAAGGTTAGTGTCTCTATTCGATTTCTGCTTTCT
GTACTCTTCGATTAAATCACTTTATTTGTTTGGAATTATATAATATAGTA
AGGAATCAGGAGGCCCGACTGATATTTTCACGATCGCAAATTTCCCGTTT
CTGATCATTGATCACTGGCTGCTGCCTGCTGGTGATTAGATGCATTAACT
CTACATGCTATGAGAGATACAGAAGTTTGCAGAATCTGTGGGAATTAGCG
TATTTGTATGACATTTCATAATATTGTGTGAATACAGGGGGTGCCACTGA
AATTATTCACAATCGAGAAGATTTTCATATTTGATTGCTGCTGCTGCTGC
TGCTGCTGCTGACCCTTTCTTCGTCCCACATGACTTCAACTGTTTCGACA
TCTCGAGAAATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGGGC
TTCGGCTTCGGCTTTGGCTTCATTTGGCCACCCGCAAACGGGGTTCAGTG
ATGTTGACGAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGT
TGTTTTGCCGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCC
GTTTAAGGAAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTG
TTGAGATGTTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGAT
AATTCTCAGTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAG
CAGGTGCATTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAAT
TGAGTAGGGAACGAATTGTGGTTGTTCTT
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