FC879000

Overview
NameFC879000
Unique NameFC879000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: EAF3_YARLI (Chromatin modification-related protein EAF3 OS=Yarrowia lipolytica GN=EAF3 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.385e-21
Identity = 63/188 (33.51%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  334 NSWDEWVGVDRLLKHTEENVMKQQALQK------KQGAD---------RSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRK-SDSGTEDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKY---LQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQY 840
            N+WDEWVG +R+L   E+N+  Q+ L+       K+G D          S  +  +  TK+KS        E  +    +G      D   ED+    K + + +P  LK QLVDDWEFV +  +LV LPR   V DIL ++    + + +      D + E++ GI+ YFD++L  +LLY+ ER+QY
Sbjct:  115 NTWDEWVGEERVLALNEDNIKLQKELKAAALAAAKKGKDFDALAPPEALSETASPAPTTKRKSMASKDSPAEGPRPVKRRGGLAALEDLEKEDDYLKRKEIALVVPDKLKAQLVDDWEFVTKDHQLVGLPRKVTVVDILKEFKKEAEAKYRPGSADADILNEVVSGIKLYFDRSLGSILLYRFEREQY 302          

HSP 2 Score: 23.0978 bits (48), Expect = 3.385e-21
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 2
Query:  272 YYVHYLGW 295
            YYVHY GW
Sbjct:  106 YYVHYKGW 113          
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: EAF3_CANAL (Chromatin modification-related protein EAF3 OS=Candida albicans GN=EAF3 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21
Identity = 72/214 (33.64%), Postives = 108/214 (50.47%), Query Frame = 1
Query:  289 WLEQKKSLLSLGHLANSWDEWVGVDRLLKHTEENVMKQ---QALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVA-----------KGKKRKS-----------DSGTEDNVSVEKLVKIQI--PSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIG---EILKGIRCYFDKALPVMLLYKKERQQY 840
            W +Q    L      + WDEWVG+DR++++ EEN  K+     L KK+ A  +++   +A TK  ++   K E    KS  A             KK+KS           +SGT  N S + L ++ +  P  LK  LV+DWE++ +  KLV LP    ++ IL  Y  YR+K+    +D +    EIL G+  YF+K+L ++LLYK E  QY
Sbjct:   71 WQDQTCYYLHYQGWNSKWDEWVGIDRIMEYNEENKFKKLELDQLTKKKKAINNNEIIVNATTKNHTNNKNKKESNKRKSSSATTTSGVTAGTNNNKKQKSASTSTTNNTSGNSGTTSNKSKQILSRLNLNFPPELKHILVNDWEYITKDRKLVSLPSQYPINQILQDYKTYRTKQLTSNSDQLSILIEILTGLEIYFNKSLSLILLYKYEHLQY 284          
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: MO4L1_RAT (Mortality factor 4-like protein 1 OS=Rattus norvegicus GN=Morf4l1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.030e-20
Identity = 67/207 (32.37%), Postives = 100/207 (48.31%), Query Frame = 1
Query:  295 EQKKSLLSLGHLANSWDEWVGVDRLLKHTEENVMKQQALQKK------QGADRSSKSGRSAQTKQKSSTDVKVEKEDIKS-------------YVAKGKKRKSDSGTEDNVSVEKLV--KIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----SIGEILKGIRCYFDKALPVMLLYKKERQQY 840
            +Q K  +       +WDEWV   R+LK+ + N+ KQ+ LQK       +G  R +  G+     Q+ + +VK +K   K+                + K+ + D   E+  +    V  K++IP  LK  LVDDW+ + +Q +L  LP   NVD IL  Y  Y  KK    TD    ++ E++ GI+ YF+  L   LLYK ER QY
Sbjct:   38 KQVKYFIHYSGWNKNWDEWVPESRVLKYVDANLQKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANY--KKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQY 242          
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: EAF3_KLULA (Chromatin modification-related protein EAF3 OS=Kluyveromyces lactis GN=EAF3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.420e-18
Identity = 59/203 (29.06%), Postives = 95/203 (46.80%), Query Frame = 1
Query:  334 NSWDEWVGVDRLLKHTEENV-MKQQALQK---------------------------KQGADRSSKSGRSAQTKQKS-STDVKVEKEDIKSYVAKGKKRKSDSGTEDNVSVEKL---VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD--SIGEILKGIRCYFDKALPVMLLYKKERQQY 840
            +SWDEWVG+DR+  + +EN+ +K+  ++K                           K+ A R+S SG    T   S S           +  A     KSD      V  ++    + I++P +L+  LVDDWE V +  KLV+LP    ++ IL+++    S     + +   + E L+GI+ YF+ +L  +LLY+ ER QY
Sbjct:   72 SSWDEWVGLDRIRPYNDENLELKKSLVEKARELKNNGGKKKSGSRPVGRPSKVEKGKKAASRTSNSGSGTNTSASSTSASNPASSSSSGTTAAASSSDKSDRKKATPVLNKRSHPKIHIKVPISLRSVLVDDWENVTKDRKLVQLPSERPIEHILSQFYADTSNSTSSVVEQAQLSEFLQGIKLYFNLSLGKLLLYRLERIQY 274          

HSP 2 Score: 28.8758 bits (63), Expect = 2.420e-18
Identity = 17/63 (26.98%), Postives = 25/63 (39.68%), Query Frame = 2
Query:  194 RVLAYHGPCIYEAKV------QKAELRKKEWR-----------------------YYVHYLGW 295
            + L YHGP +YEAKV      +   +  K+++                       Y+VHY GW
Sbjct:    8 KCLCYHGPLLYEAKVLRVYDEKNQTITSKDYKDVSIDDEKVEFDRPPEHMRQGQCYFVHYQGW 70          
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: EAF3_ASHGO (Chromatin modification-related protein EAF3 OS=Ashbya gossypii GN=EAF3 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.941e-18
Identity = 51/172 (29.65%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  334 NSWDEWVGVDRLLKHTEENV-MKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKK--DGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQY 840
            ++WDEWVG +R+  + +EN+ +K+Q +Q  + A  ++K  ++   K++ S              A+G +                + +++P  LK  LVDDWE + ++ KLV LP  P V DIL  Y + R+ +    +    + E ++G+  YFD+ L  +LLY+ ER Q+
Sbjct:   68 STWDEWVGQERIRPYNDENLALKRQLVQDAKAAAAAAKRAKARPGKRERSPAPAAPAAP-----AQGPR----------------LAVRMPVELKALLVDDWERITKERKLVALPCAPTVGDILDAYYRERTAQLASPVAQTLLHEFVEGVHLYFDQCLSHLLLYRLERLQF 218          

HSP 2 Score: 28.8758 bits (63), Expect = 6.941e-18
Identity = 18/60 (30.00%), Postives = 25/60 (41.67%), Query Frame = 2
Query:  194 RVLAYHGPCIYEAKVQK--------------------------AELRKKEWRYYVHYLGW 295
            + L YHGP +YEA+V +                          AE R +E  ++VHY GW
Sbjct:    8 KCLCYHGPLLYEARVLRVYDPASQTYRDRTRTGVPLEEEDGLPAESRGRE-HWFVHYQGW 66          
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: EAF3_DICDI (NuA4 complex subunit EAF3 homolog OS=Dictyostelium discoideum GN=DDB_G0283075 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.150e-17
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  415 KKQGADRSSKSGRSAQTKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQY 840
            +  G+  SS S +S      ++ +      +  +      KRK +     +    K + I+IP +LK +LVDDW  +N +  ++ LP+ PNV DIL K ++   K     +    E++ GI+ YF+KAL  +LLYK ER QY
Sbjct:  161 RSTGSSSSSSSSKSNNNNNNNNNNNNNNNNNNNNNNNNNNKRKRNDSKSSHFQSTKFIDIEIPLSLKNKLVDDWNSINNEKSILSLPKSPNVKDILNKIIEENDK-----SSECKEVINGIKQYFNKALGTLLLYKFERPQY 297          
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: MS3L1_PONAB (Male-specific lethal 3 homolog OS=Pongo abelii GN=MSL3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.001e-15
Identity = 60/222 (27.03%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  337 SWDEWVGVDRLLKHTEENVMKQQALQKKQGADRSSKSGRSAQ---------------TKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEDNVSV-------------EKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQY-----------RSKKDGMM---------------TDSIGEILKGIRCYFDKALPVMLLYKKERQQY 840
            SWD W   D +L+ T+EN   Q+ L +K  A R   +GR  +               T++K   D             K ++   +S  E+   V             E+ + I+IP  LKKQL DD  ++N++ +LVKLP   N+  IL  Y+++           R +   +M                D   E++ G+R  FD  LP++LLY  E+ QY
Sbjct:   62 SWDRWAAEDHVLRDTDENRRLQRKLARKAVA-RLRSTGRKKKRCRLPGVDSVLKGLPTEEKDENDENSLSSSSDCSENKDEEISEESDIEEKTEVKEEPELQTRREMEERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQY 282          

HSP 2 Score: 28.4906 bits (62), Expect = 1.001e-15
Identity = 17/51 (33.33%), Postives = 25/51 (49.02%), Query Frame = 2
Query:  179 FSEGERVLAYH-----GPCIYEAK-----VQKAELRKKEWRYYVHYLGWNK 301
            F  GE+VL +         +Y+AK     V K E  +K   Y +H+ GWN+
Sbjct:   11 FHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNR 61          
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: MS3L1_HUMAN (Male-specific lethal 3 homolog OS=Homo sapiens GN=MSL3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.001e-15
Identity = 60/222 (27.03%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  337 SWDEWVGVDRLLKHTEENVMKQQALQKKQGADRSSKSGRSAQ---------------TKQKSSTDVKVEKEDIKSYVAKGKKRKSDSGTEDNVSV-------------EKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQY-----------RSKKDGMM---------------TDSIGEILKGIRCYFDKALPVMLLYKKERQQY 840
            SWD W   D +L+ T+EN   Q+ L +K  A R   +GR  +               T++K   D             K ++   +S  E+   V             E+ + I+IP  LKKQL DD  ++N++ +LVKLP   N+  IL  Y+++           R +   +M                D   E++ G+R  FD  LP++LLY  E+ QY
Sbjct:   62 SWDRWAAEDHVLRDTDENRRLQRKLARKAVA-RLRSTGRKKKRCRLPGVDSVLKGLPTEEKDENDENSLSSSSDCSENKDEEISEESDIEEKTEVKEEPELQTRREMEERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQY 282          

HSP 2 Score: 28.4906 bits (62), Expect = 1.001e-15
Identity = 17/51 (33.33%), Postives = 25/51 (49.02%), Query Frame = 2
Query:  179 FSEGERVLAYH-----GPCIYEAK-----VQKAELRKKEWRYYVHYLGWNK 301
            F  GE+VL +         +Y+AK     V K E  +K   Y +H+ GWN+
Sbjct:   11 FHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNR 61          
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: EAF3_DROME (NuA4 complex subunit EAF3 homolog OS=Drosophila melanogaster GN=MRG15 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 6.295e-15
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 2
Query:  170 SSLFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNK 301
            ++LF +GERVL +HGP IYEAKV K +       YY+HY GW+K
Sbjct:   19 NTLFVDGERVLCFHGPLIYEAKVLKTKPDATPVEYYIHYAGWSK 62          

HSP 2 Score: 43.1282 bits (100), Expect = 6.295e-15
Identity = 19/56 (33.93%), Postives = 34/56 (60.71%), Query Frame = 1
Query:  331 ANSWDEWVGVDRLLKHTEENVMKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVE 498
            + +WDEWV  +R+LK+ ++NV ++Q L ++ G +RS K  +    K K    ++ E
Sbjct:   61 SKNWDEWVPENRVLKYNDDNVKRRQELARQCG-ERSKKDNKKGSAKAKKMEQMRNE 115          
BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: MS3L1_MOUSE (Male-specific lethal 3 homolog OS=Mus musculus GN=Msl3 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.057e-14
Identity = 61/226 (26.99%), Postives = 93/226 (41.15%), Query Frame = 1
Query:  337 SWDEWVGVDRLLKHTEENVMKQQALQKK-----QGADRSSKSGR---------SAQTKQKSSTD------------------VKVEKEDIKSYVAKGKKRKSDSGTEDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQY-----------RSKKDGMM---------------TDSIGEILKGIRCYFDKALPVMLLYKKERQQY 840
            SWD W   + +L  T+EN   Q+ L KK     +G  +  +  R         S   K+KS  D                  +K  ++      AK KK+     +   +  E+ + I IP  LKKQL DD  ++N++ +LVKLP   N+  IL  Y+++           R +    M                D   E++ G+R  FD  LP++LLY  E+ QY
Sbjct:   62 SWDRWAAEEHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEKSKNDENSVSSTCHESCGEKNGGIKEHRQRRIKVKAKAKKKVLSLRSRKEMD-ERTITIDIPDVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHTHMNVHYVPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQTQY 286          

HSP 2 Score: 28.1054 bits (61), Expect = 1.057e-14
Identity = 16/51 (31.37%), Postives = 25/51 (49.02%), Query Frame = 2
Query:  179 FSEGERVLAYH-----GPCIYEAKV-----QKAELRKKEWRYYVHYLGWNK 301
            F  GE+VL +         +Y+AK+      K E  +K   Y +H+ GWN+
Sbjct:   11 FHSGEKVLCFEPDPTKARVLYDAKIIDVIIGKDEKGRKIPEYLIHFNGWNR 61          
The following BLAST results are available for this feature:
BLAST of FC879000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EAF3_YARLI3.385e-2133.51Chromatin modification-related protein EAF3 OS=Yar... [more]
EAF3_CANAL4.176e-2133.64Chromatin modification-related protein EAF3 OS=Can... [more]
MO4L1_RAT6.030e-2032.37Mortality factor 4-like protein 1 OS=Rattus norveg... [more]
EAF3_KLULA2.420e-1829.06Chromatin modification-related protein EAF3 OS=Klu... [more]
EAF3_ASHGO6.941e-1829.65Chromatin modification-related protein EAF3 OS=Ash... [more]
EAF3_DICDI8.150e-1732.39NuA4 complex subunit EAF3 homolog OS=Dictyostelium... [more]
MS3L1_PONAB1.001e-1527.03Male-specific lethal 3 homolog OS=Pongo abelii GN=... [more]
MS3L1_HUMAN1.001e-1527.03Male-specific lethal 3 homolog OS=Homo sapiens GN=... [more]
EAF3_DROME6.295e-1554.55NuA4 complex subunit EAF3 homolog OS=Drosophila me... [more]
MS3L1_MOUSE1.057e-1426.99Male-specific lethal 3 homolog OS=Mus musculus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA60DC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC879000 ID=FC879000; Name=FC879000; organism=Citrus clementina; type=EST; length=842bp
CGAGTCGCGGCAGAAGAGAATGACCTGCAGCTAAAATTAACAAGTCAAAG
AAGAGATCATCTTCAGTCTGTCTGGCGCTGCTTCGAATAAGCTCAAAATG
GGAAGCTCATCGAAGGACGATACCGGCAGCGATGGCGACACTTCGAGCAG
AGACACGCCTCCGTCCAATTCCAGCCTCTTCTCCGAGGGCGAGCGAGTCC
TCGCCTATCATGGTCCTTGCATCTACGAAGCCAAGGTTCAAAAAGCTGAG
CTTCGGAAAAAAGAGTGGAGATACTATGTTCACTACCTTGGTTGGAACAA
AAAAAATCATTACTATCGCTTGGACATCTTGCCAACAGTTGGGACGAGTG
GGTAGGTGTGGACCGGTTGCTGAAACATACTGAAGAGAATGTCATGAAGC
AGCAAGCCCTTCAAAAAAAACAAGGTGCAGACAGGAGTTCAAAGTCTGGA
CGGTCAGCTCAGACTAAGCAAAAAAGTTCTACCGATGTGAAGGTGGAGAA
AGAGGACATCAAAAGCTATGTGGCAAAAGGGAAGAAGCGAAAGAGTGACT
CAGGCACAGAGGACAACGTATCTGTAGAAAAGCTTGTCAAGATCCAAATC
CCTTCTACACTAAAGAAGCAGCTTGTTGACGATTGGGAATTTGTTAATCA
GCAGGACAAGCTTGTTAAACTTCCACGTTTGCCAAATGTTGATGATATTT
TGACGAAGTACCTTCAATACAGGTCAAAGAAGGATGGCATGATGACTGAT
TCAATTGGAGAAATCTTGAAAGGCATTAGATGTTACTTCGACAAAGCATT
GCCTGTGATGCTCCTTTACAAGAAAGAGCGCCAACAGTATCA
back to top