FC879000

Overview
NameFC879000
Unique NameFC879000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC879000 vs. ExPASy Swiss-Prot
Match: EAF3_YEAST (Chromatin modification-related protein EAF3 OS=Saccharomyces cerevisiae GN=EAF3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.301e-14
Identity = 64/223 (28.70%), Postives = 94/223 (42.15%), Query Frame = 1 
Query:  334 NSWDEWVGVDRLLKHTEENVMKQQALQKKQGADRSSKSGRSAQTKQKSSTDV-----------------KVEKEDIKSYVAK-----------------GKKRKSDS---GTEDNVSVEKL---------------VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSK--KDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQY 840
            +SWDEWVG DR+  + EEN+  ++ L  +  A  + KS    Q K+K ST +                  + K   +S++                   G   +S S   G +D      L               + +QIP  LK  LVDDWE+V +  K+ +LP    V+ +L KY    S+  +       + E   G++ YFDK L  MLLY+ ER QY
Sbjct:   86 SSWDEWVGYDRIRAYNEENIAMKKRLANE--AKEAKKSLLEQQKKKKLSTSLGGPSNGGKRKGDSRSNASISKSTSQSFLTSSVSGRKSGRSSANSLHPGSSLRSSSDQNGNDDRRRSSSLSPNMLHHIAGYPTPKISLQIPIKLKSVLVDDWEYVTKDKKICRLPADVTVEMVLNKYEHEVSQELESPGSQSQLSEYCAGLKLYFDKCLGNMLLYRLERLQY 306
The following BLAST results are available for this feature:
BLAST of FC879000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EAF3_YEAST1.301e-1428.70Chromatin modification-related protein EAF3 OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC879000 ID=FC879000; Name=FC879000; organism=Citrus clementina; type=EST; length=842bp
CGAGTCGCGGCAGAAGAGAATGACCTGCAGCTAAAATTAACAAGTCAAAG
AAGAGATCATCTTCAGTCTGTCTGGCGCTGCTTCGAATAAGCTCAAAATG
GGAAGCTCATCGAAGGACGATACCGGCAGCGATGGCGACACTTCGAGCAG
AGACACGCCTCCGTCCAATTCCAGCCTCTTCTCCGAGGGCGAGCGAGTCC
TCGCCTATCATGGTCCTTGCATCTACGAAGCCAAGGTTCAAAAAGCTGAG
CTTCGGAAAAAAGAGTGGAGATACTATGTTCACTACCTTGGTTGGAACAA
AAAAAATCATTACTATCGCTTGGACATCTTGCCAACAGTTGGGACGAGTG
GGTAGGTGTGGACCGGTTGCTGAAACATACTGAAGAGAATGTCATGAAGC
AGCAAGCCCTTCAAAAAAAACAAGGTGCAGACAGGAGTTCAAAGTCTGGA
CGGTCAGCTCAGACTAAGCAAAAAAGTTCTACCGATGTGAAGGTGGAGAA
AGAGGACATCAAAAGCTATGTGGCAAAAGGGAAGAAGCGAAAGAGTGACT
CAGGCACAGAGGACAACGTATCTGTAGAAAAGCTTGTCAAGATCCAAATC
CCTTCTACACTAAAGAAGCAGCTTGTTGACGATTGGGAATTTGTTAATCA
GCAGGACAAGCTTGTTAAACTTCCACGTTTGCCAAATGTTGATGATATTT
TGACGAAGTACCTTCAATACAGGTCAAAGAAGGATGGCATGATGACTGAT
TCAATTGGAGAAATCTTGAAAGGCATTAGATGTTACTTCGACAAAGCATT
GCCTGTGATGCTCCTTTACAAGAAAGAGCGCCAACAGTATCA
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