FC879001

Overview
NameFC879001
Unique NameFC879001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MCAT_MACFA (Mitochondrial carnitine/acylcarnitine carrier protein OS=Macaca fascicularis GN=SLC25A20 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.909e-15
Identity = 59/179 (32.96%), Postives = 89/179 (49.72%), Query Frame = 2
Query:  383 FTYVCL----YPLDTIKTKLQTK-----GASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSK----LEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKG------RSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            F  VCL    +PLDT+K +LQT+     G   MYS TFD   KT   +GI G Y G++A ++G T   A+ F     GK    K    +  YP +     AG +  I ++ IM P E I   +Q  A         + +   K+ +  GI G+Y G   TL+R++PA  + + ++E++K
Sbjct:   19 FGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGIRGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQLF---AAGMLSGIFTTGIMTPGERIKCLLQIQASSGETKYTGTLDCAKKLYQEFGIRGIYKGTVVTLMRDVPASGMYFMTYEWVK 194          

HSP 2 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 50/170 (29.41%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  383 FTYVCLYPLDTIKTKLQTKGAS--KMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSF-------LSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGR----SWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFE 853
            FT   + P + IK  LQ + +S    Y+ T D   K +Q  GI G Y G    L+    +S +YF T E+ K+        +S+L + P VL+   AG +  I + A+ +P +++  R Q    G+      +VL +++  +G+  LY G++A ++R  PA    +  FE
Sbjct:  123 FTTGIMTPGERIKCLLQIQASSGETKYTGTLDCAKKLYQEFGIRGIYKGTVVTLMRDVPASGMYFMTYEWVKNIFTPEGKRVSELSV-PRVLV---AGGIAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLRELIPDEGVTSLYKGFNAVMIRAFPANAACFLGFE 288          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MCAT_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein OS=Mus musculus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.963e-15
Identity = 55/169 (32.54%), Postives = 83/169 (49.11%), Query Frame = 2
Query:  401 YPLDTIKTKLQTK-----GASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLE----IYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAK------GRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            +PLDT+K +LQT+     G   MYS T D   KT   +GI G Y G++A ++G T   A+ F     GK    K       YP +    TAG +  + ++ IM P E I   +Q  A         + +   K+ +  GI G Y G   TL+R++PA  + + ++E+LK
Sbjct:   29 HPLDTVKVRLQTQPPSLSGQPPMYSGTLDCFRKTLMREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKSPEDELSYPQLF---TAGMLSGVFTTGIMTPGERIKCLLQIQASSGENKYSGTLDCAKKLYQEFGIRGFYKGTVLTLMRDVPASGMYFMTYEWLK 194          

HSP 2 Score: 74.7146 bits (182), Expect = 7.923e-13
Identity = 53/171 (30.99%), Postives = 84/171 (49.12%), Query Frame = 2
Query:  383 FTYVCLYPLDTIKTKLQTKGAS--KMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEF--------GKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGR----SWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFE 853
            FT   + P + IK  LQ + +S    YS T D   K +Q  GI GFY G    L+    +S +YF T E+        GKS +S L + P +L+   AG    I + A+ +P +++  R Q    G+      +VL +++  +G+  LY G++A ++R  PA    +  FE
Sbjct:  123 FTTGIMTPGERIKCLLQIQASSGENKYSGTLDCAKKLYQEFGIRGFYKGTVLTLMRDVPASGMYFMTYEWLKNLFTPEGKS-VSDLSV-PRILV---AGGFAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLRELIREEGVTSLYKGFNAVMIRAFPANAACFLGFE 288          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MRS4_YEAST (Mitochondrial RNA-splicing protein MRS4 OS=Saccharomyces cerevisiae GN=MRS4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.465e-15
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTKGASKMYSS-TFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTA--GAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFE 853
            ++P+D +KT++Q  G +K  S+     I K    +G +  + GV +V++G+  + A+YFGT EF K+ L   E   +     TA  G +  I + A+M P + + QR+Q     R W V  +I + +G    Y  Y  TL  N+P    ++  +E
Sbjct:   41 MFPIDALKTRVQAAGLNKAASTGMISQISKISTMEGSMALWKGVQSVILGAGPAHAVYFGTYEFCKARLISPEDMQTHQPMKTALSGTIATIAADALMNPFDTVKQRLQLDTNLRVWNVTKQIYQNEGFAAFYYSYPTTLAMNIPFAAFNFMIYE 195          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: SAMC_DROME (S-adenosylmethionine mitochondrial carrier protein homolog OS=Drosophila melanogaster GN=CG4743 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.106e-14
Identity = 47/161 (29.19%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  392 VCLYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKL-EIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQA--GAKGRSWEVLLKILEVDGI-LGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            + L+P+DT+KT+LQ++                ++  G  G Y G++    GS  ++A++F T E GK FLS + +   S  +   A +   +++  I VP E+  QR Q   G K    ++LL+    +G+  GLY G+ +T++R +P  ++ +  +EY K
Sbjct:   29 IALFPIDTVKTRLQSE-------------LGFWRAGGFRGIYKGLAPAAAGSAPTAALFFCTYECGKQFLSSVTQTKDSPYVHMAAASAAEVLACLIRVPVEIAKQRSQTLQGNKQSGLQILLRAYRTEGLKRGLYRGFGSTIMREIPFSLIQFPLWEYFK 176          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MCFJ_DICDI (Mitochondrial substrate carrier family protein J OS=Dictyostelium discoideum GN=mcfJ PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.106e-14
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTKGASKM------YSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKS-FLSKLEIYPSVLIPPT--AGAMGNIVSSAIMVPKELITQRMQAGA-------KGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKA 865
            ++PLD I+T+LQ +G+  +      Y+ TFD   K  + +G    Y G      G   S AIYFG+ EF K  FL       S L+  T  +GA+   ++S I VP ++ TQ +Q          KG S +V  KI    GI GLY G+ AT++RN+P   + + ++E  K+
Sbjct:   46 MFPLDVIRTRLQVQGSQNVIQSFPQYNGTFDGFKKLIRLEGKRALYKGFLTSECGYLCSRAIYFGSYEFVKQGFLKGRSDSDSDLLFVTTISGAISEALASVIWVPFDVATQSVQIQGSLSKPKYKGGS-DVFKKIYGERGIKGLYKGFGATIIRNVPYSGIWWGTYEISKS 216          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.106e-14
Identity = 51/170 (30.00%), Postives = 88/170 (51.76%), Query Frame = 2
Query:  401 YPLDTIKTKLQTKGASK-MYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIP----PTAGAMGNIVSSAIMVPKELITQRMQA--GAKGR---SWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSR 880
            +PLDTIK +LQT+     +YS T D + KT   +G  G Y GV++ LVG +  +++ F      K+ + KL   P+  +       AGA+  I    +  P +L   +MQ   G K +   + +   +I +V G+ G++ G  ATL+R++PA    + ++E  +  + S+
Sbjct:   32 HPLDTIKVRLQTQSVGNPIYSGTMDCLKKTISQEGFAGLYKGVASPLVGLSIMNSVMFLAYGQSKTLIQKLSDNPNEALDLKGLTAAGALAGIAIGFVDAPVDLFKSQMQVQQGDKNQYKSTADCAKQIWKVGGVRGVFQGLGATLVRDIPANACYFGAYELCRDFLASK 201          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: COLT_DROME (Congested-like trachea protein OS=Drosophila melanogaster GN=colt PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.463e-14
Identity = 57/178 (32.02%), Postives = 88/178 (49.44%), Query Frame = 2
Query:  401 YPLDTIKTKLQTK-----GASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLE----IYPSVLIPPTAGAMGNIVSSAIMVPKELI-----TQRMQAGAKGRSW--EVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSRTK 886
            +PLDTIK +LQT      G   +Y  TFD   KT + +G+ G Y G+SA L G     A+ F     GK    + E     YP + +   AG+   + S+ IM P E I     TQ+ Q G +  +   +   K+ +  G+  ++ G  AT+LR+LPA  L +  +E L+    S+++
Sbjct:   34 HPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYALGKRLQQRGEDAKLTYPQIFV---AGSFSGLFSTLIMAPGERIKVLLQTQQGQGGERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQDVAKSKSE 208          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: PET8_YEAST (Putative mitochondrial carrier protein PET8 OS=Saccharomyces cerevisiae GN=PET8 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.222e-13
Identity = 51/172 (29.65%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  386 TYVCLYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGK----SFLSKLEIYPSVLIPPT-----AGAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEVDGILGL----YAGYSATLLRNLPAGVLSYSSFEYLK 862
            T +  +P+DTIKT+LQ KG               F   G  G Y G+ + +V S   ++++F + ++ K     ++SKL    S  +  T     + ++G I +  + VP E++ QR Q  +   SW+ L  IL  D   GL    Y G+S T++R +P   + +  +EYLK
Sbjct:   18 TDLVFFPIDTIKTRLQAKGGF-------------FANGGYKGIYRGLGSAVVASAPGASLFFISYDYMKVKSRPYISKLYSQGSEQLIDTTTHMLSSSIGEICACLVRVPAEVVKQRTQVHSTNSSWQTLQSILRNDNKEGLRKNLYRGWSTTIMREIPFTCIQFPLYEYLK 176          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: AGC1_YEAST (Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae GN=AGC1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.557e-13
Identity = 46/165 (27.88%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLS----KLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAK------GRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            +YP+D IKT++Q + +   Y ++ D + K    +GI G YSG+   L+G     AI     +F ++ L+    KL ++P ++   +AGA   I ++    P E++  R+Q  +        ++ E   +I++  G+ GLY G +A L+R++P   + + ++ +LK
Sbjct:  548 VYPIDFIKTRMQAQRSLAQYKNSIDCLLKIISREGIKGLYSGLGPQLIGVAPEKAIKLTVNDFMRNRLTDKNGKLSLFPEIISGASAGACQVIFTN----PLEIVKIRLQVQSDYVGENIQQANETATQIVKKLGLRGLYNGVAACLMRDVPFSAIYFPTYAHLK 708          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MRS3_YEAST (Mitochondrial RNA-splicing protein MRS3 OS=Saccharomyces cerevisiae GN=MRS3 PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 44/155 (28.39%), Postives = 76/155 (49.03%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQT-KGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTA--GAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFE 853
            ++P+D +KT++Q+  A  + +    +      T +G L  + GV +V++G+  + A+YFGT EF K  L       +     TA  GA     S A+M P + I QR+Q       W+   +I + +G+   Y  Y  TL+ N+P    ++  +E
Sbjct:   51 MFPIDALKTRIQSANAKSLSAKNMLSQISHISTSEGTLALWKGVQSVILGAGPAHAVYFGTYEFCKKNLIDSSDTQTHHPFKTAISGACATTASDALMNPFDTIKQRIQLNTSASVWQTTKQIYQSEGLAAFYYSYPTTLVMNIPFAAFNFVIYE 205          
The following BLAST results are available for this feature:
BLAST of FC879001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MCAT_MACFA2.909e-1532.96Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_MOUSE4.963e-1532.54Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MRS4_YEAST8.465e-1530.32Mitochondrial RNA-splicing protein MRS4 OS=Sacchar... [more]
SAMC_DROME1.106e-1429.19S-adenosylmethionine mitochondrial carrier protein... [more]
MCFJ_DICDI1.106e-1434.30Mitochondrial substrate carrier family protein J O... [more]
MCFG_DICDI1.106e-1430.00Mitochondrial substrate carrier family protein G O... [more]
COLT_DROME2.463e-1432.02Congested-like trachea protein OS=Drosophila melan... [more]
PET8_YEAST1.222e-1329.65Putative mitochondrial carrier protein PET8 OS=Sac... [more]
AGC1_YEAST3.557e-1327.88Mitochondrial aspartate-glutamate transporter AGC1... [more]
MRS3_YEAST4.645e-1328.39Mitochondrial RNA-splicing protein MRS3 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC879001 ID=FC879001; Name=FC879001; organism=Citrus clementina; type=EST; length=895bp
ACCGTTTTGGCCCCTCCATTTGGGCGACAAAAGGGCCAGAGAAAGCAGAT
GCACTGAAGATACAGCCATGGAATCAAGACTCTCTGCATCTCTGGGACTC
CCATCTCCAGACCCAAATCACTATCCACTTCTCTCAGAATCCACTTCCCT
CTTCACACACTTGAGCACAAATCTCTTATCAGCACAAAGCCACAAACCCT
TTAAAAATGACGCCAAATTTGCCTCGACTTCGCTCTCCACTGAATCCCAA
ACCAAATTCCAACCATCCAATTGGCTCAAACCCGCTTCGAGAAATAGTCC
CAAGATTCACTCTCTAATAAAGAGCCTCTCTGTTTTCGAGCGCGCCCTTA
TTGGCGCAGCCGCTGGCGGCATTGCTGGTGCGTTCACGTATGTGTGCCTT
TACCCGCTTGATACAATCAAGACCAAGCTGCAAACAAAAGGTGCTTCCAA
AATGTACTCCAGCACATTTGATGCTATCTTTAAAACCTTTCAAACGAAGG
GGATTCTAGGGTTTTACAGCGGTGTTTCGGCGGTTCTTGTGGGTTCTACT
GCCTCTTCAGCTATTTATTTTGGGACTTGTGAGTTTGGGAAATCGTTTTT
GTCAAAATTGGAGATATACCCATCTGTGCTCATCCCTCCTACTGCTGGTG
CTATGGGCAATATTGTGTCGTCAGCAATAATGGTGCCTAAGGAGTTGATT
ACTCAAAGGATGCAAGCTGGTGCAAAGGGTAGATCTTGGGAGGTTTTGTT
GAAGATTTTGGAGGTAGATGGAATTTTGGGGCTTTATGCTGGGTATTCTG
CTACATTGTTAAGGAATTTGCCTGCTGGTGTGTTGAGTTATTCGTCTTTT
GAGTACTTAAAAGCTGCGGTATTGAGTAGGACTAAGAATGCAAAT
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