FC879001

Overview
NameFC879001
Unique NameFC879001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: S2544_HUMAN (Solute carrier family 25 member 44 OS=Homo sapiens GN=SLC25A44 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 45/176 (25.57%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  392 VCLYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAK---------------------GRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEY 856
            V +YP   I+T+LQ +    +Y  TFDA  K  +  GI G Y G   V   +  S   Y  T E  + F++      + +    AG   ++V+ +I VP ++++Q +    K                     G++ +++ +IL+ DG+ G Y GY A+LL  +P   + +  + +
Sbjct:   33 VSVYPFTLIRTRLQVQKGKSLYHGTFDAFIKILRADGITGLYRGF-LVNTFTLISGQCYVTTYELTRKFVADYS-QSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNPEGQGVVAFGQTKDIIRQILQADGLRGFYRGYVASLLTYIPNSAVWWPFYHF 206          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MFRN1_DANRE (Mitoferrin-1 OS=Danio rerio GN=slc25a37 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 43/164 (26.22%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  389 YVCLYPLDTIKTKLQT--KGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKL--EIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQA-GAKGRS-WEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            +  +YP+D++KT++Q+        Y S + A+ +  +T+G+L    G++  ++G+  + A+YF   E  K  LS +      S +    AG++  ++  A+M P E++ QRMQ   +  RS ++ +L +   +G+   Y  YS  L  N+P   + + ++E+++
Sbjct:   48 HTVMYPVDSVKTRMQSLQPDPKAQYRSVYGALKRIVRTEGLLRPLRGLNITVLGAGPAHALYFACYERIKRSLSDVIQNGGNSHIANGVAGSVATVLHDAVMNPAEVVKQRMQMYNSPYRSLYDCVLMVSRKEGLAAFYRSYSTQLTMNIPFQAVHFITYEFMQ 211          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: AGC1_ASHGO (Mitochondrial aspartate-glutamate transporter AGC1 OS=Ashbya gossypii GN=AGC1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 42/169 (24.85%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLS----KLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGA-----KGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLS 877
            +YP+D +KT++Q +     Y ++ D + K    +G+ G YSG+   L+G     AI     +  ++ L+    KL +   ++   TAGA   + ++    P E++  R+Q  +       R+    + +++  G++GLY G  A LLR++P   + + ++ ++K+ V +
Sbjct:  541 VYPIDMVKTRMQAQRDFSKYKNSIDCLLKILSKEGVRGLYSGLGPQLIGVAPEKAIKLTVNDHMRATLAGRDGKLSLPCEIISGATAGACQVVFTN----PLEIVKIRLQVKSDYVADAARNSVNAISVIKNLGLIGLYRGAGACLLRDIPFSAIYFPTYAHIKSNVFN 705          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: YQ73_SCHPO (Uncharacterized mitochondrial carrier C1442.03 OS=Schizosaccharomyces pombe GN=SPCC1442.03 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 46/171 (26.90%), Postives = 89/171 (52.05%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQT----KGIL-GFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGRSWE------------VLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYL 859
            ++ LDT+KT+ Q    + +Y++ ++ + K + T    +G+  G YSGV  +L+GS  ++A++F + E+ K  L      P  L    AG +G++ +S + VP E++  R+Q   +  +               + +I + +G+   + GY AT+LR++P     +S F+ L
Sbjct:   33 MHSLDTVKTRQQ----AALYTNKYNGMVKCYSTILCEEGVFHGLYSGVCPMLIGSLPATALFFSSYEYTKRHLMSNYNLPETLCFLLAGFVGDLFASVVYVPSEVLKTRLQLQGRYNNPHFQSNYNYPSFRGAVKQIAKQEGMKTFFYGYRATILRDIP-----FSGFQLL 194          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: TPC1_ASPNC (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 41/164 (25.00%), Postives = 76/164 (46.34%), Query Frame = 2
Query:  401 YPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGRS-------------WEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFE 853
            YPLD ++T+   +G  ++Y+S   ++    + +G  GF+ G SA +        ++F T E  +  L++ +  P       AG + ++ S  +M P +LI +R+Q     R              +  +  IL   GI GLY G + +L +  PA  ++  ++E
Sbjct:  141 YPLDLLRTRFAAQGTDRVYTSLMSSVRDIARNEGYAGFFRGCSAAVGQIVPYMGLFFATYEALRPPLAQYQDLPFGSGDAAAGVIASVSSKTVMFPLDLIRKRLQVQGPTRQLYIHRNIPEYQGVFNTMKLILRTQGIRGLYRGLTVSLFKAAPASAVTMWTYE 304          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: S2544_PONAB (Solute carrier family 25 member 44 OS=Pongo abelii GN=SLC25A44 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 45/176 (25.57%), Postives = 79/176 (44.89%), Query Frame = 2
Query:  392 VCLYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAK---------------------GRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEY 856
            V +YP   I+T+LQ +    +Y  TFDA  K  +  GI G Y G   V   +  S   Y  T E  + F++      + +    AG   ++V+ +I VP ++++Q +    K                     G++ +++ +IL  DG+ G Y GY A+LL  +P   + +  + +
Sbjct:   33 VSVYPFTLIRTRLQVQKGKSLYHGTFDAFIKILRADGITGLYRGF-LVNTFTLISGQCYVTTYELTRKFVADYS-QSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNPEGQGVVAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYHF 206          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: S2544_MOUSE (Solute carrier family 25 member 44 OS=Mus musculus GN=Slc25a44 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 49/184 (26.63%), Postives = 83/184 (45.11%), Query Frame = 2
Query:  392 VCLYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAK---------------------GRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSR 880
            V +YP   I+T+LQ +    +Y  TFDA  K  +  G+ G Y G   V   +  S   Y  T E  + F++      + +    AG   ++V+ +I VP ++++Q +    K                     G++ +++ +IL  DG+ G Y GY A+LL  +P   + +  F +  A  LSR
Sbjct:   33 VSVYPFTLIRTRLQVQKGKSLYHGTFDAFVKILRADGVAGLYRGF-LVNTFTLISGQCYVTTYELTRKFVADYS-QSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVHGNLEGQGVIAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAV-WWPFYHFYAEQLSR 213          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: PET8_ASHGO (Putative mitochondrial carrier protein PET8 OS=Ashbya gossypii GN=PET8 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 49/170 (28.82%), Postives = 80/170 (47.06%), Query Frame = 2
Query:  386 TYVCLYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKL-------EIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEV---DGIL-GLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            T V  +P+DT+KT+LQ KG               F   G  G Y G+ + +V S   ++++F T +  K  L  +       E    VL    + ++G + +  + VP E+I QR Q      S + L  IL     +G++ GLY G+  T++R +P   + +  +EYLK
Sbjct:   19 TDVVFFPIDTLKTRLQAKGGF-------------FHNGGYRGIYRGLGSAVVASAPGASLFFVTYDSMKQQLRPVMGRWTASEQLAEVLTHMLSSSLGEMSACLVRVPAEVIKQRTQTHHTNSSLQTLRLILRDPTGEGVVRGLYRGWWTTIMREIPFTCIQFPLYEYLK 175          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: TPC1_ASPFU (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus fumigatus GN=tpc1 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 39/164 (23.78%), Postives = 80/164 (48.78%), Query Frame = 2
Query:  401 YPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGRS-------------WEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFE 853
            YPLD ++T+   +G  ++Y+S   ++    +++G  GF+ G SA +        ++F T E  +  LS LE  P       AG + ++++ + + P +L+ +R+Q     R+             +  +  I+   G+ GLY G + +L++  PA  ++  ++E
Sbjct:  141 YPLDLLRTRFAAQGTERIYTSLLASVRDIARSEGPAGFFRGCSAAVGQIVPYMGLFFATYESLRPVLSGLENMPFGSGDAAAGVIASVLAKSGVFPLDLVRKRLQVQGPTRTLYVHRNIPEYRGVFSTIAMIVRTQGVRGLYRGLTVSLIKAAPASAITMWTYE 304          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: HDCPB_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog B OS=Danio rerio GN=hdmcpb PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 51/161 (31.68%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  401 YPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPP------TAGAMGNIVSSAIMVPKELITQRMQ------------AGAKGRS-WEVLLKILEVDGILGLYAGYSATLLRNLPA 826
            YPLDT+K +LQT+     YS  +  + KT + +G+ GFY G+S  +   + SS++ FGT      FL +L+ + S   P        AG  G +    +M P +++  R+Q            + +K R   + LL+I   +G+LGLY G +A  LR+ P+
Sbjct:   21 YPLDTVKVRLQTQTG---YSGFWQCVRKTCRNEGLQGFYRGMSMPISTVSISSSLVFGTYRNILQFLHQLQ-HRSAGEPHHKAHIFLAGFTGGVTQVLVMAPADIVKVRLQCQTEPVQHISQESSSKYRGPVQCLLRIARDEGLLGLYKGSAALALRDGPS 177          
The following BLAST results are available for this feature:
BLAST of FC879001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
S2544_HUMAN2.549e-1125.57Solute carrier family 25 member 44 OS=Homo sapiens... [more]
MFRN1_DANRE2.549e-1126.22Mitoferrin-1 OS=Danio rerio GN=slc25a37 PE=1 SV=1[more]
AGC1_ASHGO2.549e-1124.85Mitochondrial aspartate-glutamate transporter AGC1... [more]
YQ73_SCHPO4.348e-1126.90Uncharacterized mitochondrial carrier C1442.03 OS=... [more]
TPC1_ASPNC4.348e-1125.00Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2544_PONAB4.348e-1125.57Solute carrier family 25 member 44 OS=Pongo abelii... [more]
S2544_MOUSE4.348e-1126.63Solute carrier family 25 member 44 OS=Mus musculus... [more]
PET8_ASHGO4.348e-1128.82Putative mitochondrial carrier protein PET8 OS=Ash... [more]
TPC1_ASPFU5.678e-1123.78Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
HDCPB_DANRE5.678e-1131.68Hepatocellular carcinoma down-regulated mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC879001 ID=FC879001; Name=FC879001; organism=Citrus clementina; type=EST; length=895bp
ACCGTTTTGGCCCCTCCATTTGGGCGACAAAAGGGCCAGAGAAAGCAGAT
GCACTGAAGATACAGCCATGGAATCAAGACTCTCTGCATCTCTGGGACTC
CCATCTCCAGACCCAAATCACTATCCACTTCTCTCAGAATCCACTTCCCT
CTTCACACACTTGAGCACAAATCTCTTATCAGCACAAAGCCACAAACCCT
TTAAAAATGACGCCAAATTTGCCTCGACTTCGCTCTCCACTGAATCCCAA
ACCAAATTCCAACCATCCAATTGGCTCAAACCCGCTTCGAGAAATAGTCC
CAAGATTCACTCTCTAATAAAGAGCCTCTCTGTTTTCGAGCGCGCCCTTA
TTGGCGCAGCCGCTGGCGGCATTGCTGGTGCGTTCACGTATGTGTGCCTT
TACCCGCTTGATACAATCAAGACCAAGCTGCAAACAAAAGGTGCTTCCAA
AATGTACTCCAGCACATTTGATGCTATCTTTAAAACCTTTCAAACGAAGG
GGATTCTAGGGTTTTACAGCGGTGTTTCGGCGGTTCTTGTGGGTTCTACT
GCCTCTTCAGCTATTTATTTTGGGACTTGTGAGTTTGGGAAATCGTTTTT
GTCAAAATTGGAGATATACCCATCTGTGCTCATCCCTCCTACTGCTGGTG
CTATGGGCAATATTGTGTCGTCAGCAATAATGGTGCCTAAGGAGTTGATT
ACTCAAAGGATGCAAGCTGGTGCAAAGGGTAGATCTTGGGAGGTTTTGTT
GAAGATTTTGGAGGTAGATGGAATTTTGGGGCTTTATGCTGGGTATTCTG
CTACATTGTTAAGGAATTTGCCTGCTGGTGTGTTGAGTTATTCGTCTTTT
GAGTACTTAAAAGCTGCGGTATTGAGTAGGACTAAGAATGCAAAT
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