FC888646

Overview
NameFC888646
Unique NameFC888646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1842 contig Ccv1_Contig1842:39..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.056e-15
Identity = 69/246 (28.05%), Postives = 102/246 (41.46%), Query Frame = 3
Query:   81 NGGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTINGHSYFN----LVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNT--YLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQF 764
            N  G W+ ARAT+Y               G  N+    Y   TA  +  +F +G  CGSCYE++C   P+    P T+ +T  N+                    HFDLS   F  +A+          G++ V +RRV C    G +   +     N     VL+  V   GD+  + I+   +  W+PM  +WG  W+ +T   L G   S  +T+  G+ V + +V PA W     Y S  QF
Sbjct:   38 NYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPI--------------APYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 268          
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.686e-15
Identity = 68/246 (27.64%), Postives = 102/246 (41.46%), Query Frame = 3
Query:   81 NGGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTINGHSYFN----LVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNT--YLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQF 764
            N  G W+ ARAT+Y               G  N+    Y   TA  +  +F +G  CGSCYE++C   P+    P T+ +T  N+                    HFDLS   F  +A+          G++ V +RRV C    G +   +     N     VL+  V   GD+  + I+   +  W+PM  +WG  W+ +T   L G   S  +T+  G+ V + ++ PA W     Y S  QF
Sbjct:   38 NYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVFITDMNYEPI--------------APYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDIIPANWRPDAVYTSNVQF 268          
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.508e-15
Identity = 67/233 (28.76%), Postives = 103/233 (44.21%), Query Frame = 3
Query:   96 WINARATFYXXXXXXXXXXXXXXYGNLYS-QGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRG-GIRFTINGHS--YFNLVLITNVGGAGDVHAVSIK--GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTYS 752
            W+ A AT+Y              YG+L   + +     A+S  LF  G  CG+CY+++C+ D   C    + + AT+            G        HFDLS   F H+A           G++ + YRR  C  RG  I F +N  S  Y+  +LI    G GD+ ++ I+  GS+  W  M   WG NW           S ++TT S+ +T+++ +V P+ W    TY+
Sbjct:   40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCL-DKTICSKRAVTIIATD--------QSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKE-WISMKHIWGANWCIVEGPLKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYT 262          
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.983e-15
Identity = 68/232 (29.31%), Postives = 96/232 (41.38%), Query Frame = 3
Query:   96 WINARATFYXXXXXXXXXXXXXXYGNLYSQ-GYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRG-GIRFTIN-GHSYFNLVLITNV-GGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGR-TVTSYNVAPAGWSFGRTYS 752
            W  A AT+Y              YG L       T   A+S  LF  G  CG+CY+++C+ D   C    + V  T+ C          GG C   + HFDLS   F  +A           G + V YRR  C   G  I F +N G + F L L+     G GD+ ++ +K + +  WQ M   WG  W           S  +TT   R T+++ +V P  W+   TY+
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCL-DASICSRRAVTVIVTDEC---------PGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPLVGPFSVRLTTLTTRQTLSAQDVIPKNWTPKATYT 266          
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.814e-15
Identity = 69/237 (29.11%), Postives = 102/237 (43.04%), Query Frame = 3
Query:   93 GWINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCV-NDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYRRVPCGRRG-GIRFTINGHSYFN--LVLITNVGGAGDVHAVSI----KGSRTGWQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 749
            GW N  AT+Y              Y     Q  + +  AA S  ++++G  CGSCY + C  N+    +P T+++T                G C     HFD+S   F  +A      Q R AG++ + Y RV C   G G+ F ++  S  N   +L+       D+ AV I     G+   W PM ++WG  W+  S + L G   S  +T S G+   + N  PAGW+ G  Y
Sbjct:   38 GWSNGIATWYGDPNGAGSEGGACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQG--PGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTFVVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWRLNSGSALQG-PFSVRLTFSSGQMFVASNAIPAGWNPGMAY 271          
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.021e-14
Identity = 66/233 (28.33%), Postives = 102/233 (43.78%), Query Frame = 3
Query:   96 WINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYRRVPCGRRG-GIRFTINGHSYFN--LVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYLNGQS-LSFEVTT-SDGRTVTSYNVAPAGWSFGRTY 749
            W  A +T+Y              YGN  +Q  +    +A   +LF +G  CG+CY++KC +    C    + V  T+ C             C     HFDLS   F  +A      Q R  G + + Y++V C   G  + F ++  S  N   VL+  V G G++  + +K +     W  MS++WG  W+ +     ++ LS  VT+   G+TV + NV PA W  G  Y
Sbjct:   47 WSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA-CSKNPVTVVITDECPG-----------CVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIY 267          
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 64/236 (27.12%), Postives = 96/236 (40.68%), Query Frame = 3
Query:   84 GGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPC---GRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG---WQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWS 734
            G   W NA+AT+Y               G   +    +   T+  +  L+  G  CGSCY ++C  +P  C     T+ +T  N+                  Q HFDLS   F  +A+        RAG++ V + RVPC   G + G          +  VL+    G GDV  V +K +  G   W PM  +WG  W+  SN  L     S  + +  G+T+ + +V P  W+
Sbjct:   44 GAAAWGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPL--------------SQYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRA-PFSIRIRSDSGKTLVAPDVIPLNWT 263          
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.274e-14
Identity = 64/240 (26.67%), Postives = 109/240 (45.42%), Query Frame = 3
Query:   78 ANGGGGWINARATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTING--HSYFNLVLITNVGGAGDVHAVSI--KGSRTGWQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 752
            A  G  W++A+AT+Y                Y ++    + +  A  +  +F +GL CGSC+EIKC + P  C    ++V  T+              +      HFDL+   F  +A+        +AG++ + +RRV C     + F +    +  +  +L+  V G GD+ AV I  KGS T ++P+  +WG  W+  S+  + G  ++ ++TT  G      +V PAGW     Y+
Sbjct:   43 AKYGSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDM------------NYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIKEKGSDT-YEPLKHSWGAIWRKDSDKPIKG-PITVQLTTEGGTKTVYDDVIPAGWKPNTAYT 267          
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.878e-14
Identity = 66/246 (26.83%), Postives = 102/246 (41.46%), Query Frame = 3
Query:   81 NGGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWC--LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRGGIRFTIN----GHSYFNLVLITNVGGAGDVHAVSI-KGSRTGWQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGWSFGRTY-SGAQF 764
            N    W+ ARAT+Y               G  N+    Y    +  +  +F +G  CGSCYE+KC   P  C   P T+ +T  N+                    HFD S   F  +A         +AG++ + +RRV C   GG + T +     +  +  VL+  V   GDV  + + +     W+PM  +WG  W+ +T    ++  S  VTT  G+++ + +V P  W     Y S  QF
Sbjct:   38 NYNAPWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPI--------------SAYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIWRMDTATPLKAPFSIRVTTESGKSLIAKDVIPVNWMPDAIYVSNVQF 268          
BLAST of FC888646 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.615e-14
Identity = 67/241 (27.80%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   78 ANGGGGWINARATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTIN---GHSYFNLVLITNVGGAGDVHAVSI--KGSRTGWQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 752
            A  G  W++A+AT+Y                Y ++    + +  A  +  +F +GL CGSC+EIKC + P  C    ++V  T+              +      HFDL+   F  +A+        +AG++ + +RRV C     + F +    G +Y  L L+  V G GD+ AV +  KGS T ++P+  +WG  W+  S+  L G  L+  +TT  G      +V PA W     Y+
Sbjct:   44 ATYGKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECSGKPVVVHITDM------------NYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVKEKGSDT-YEPLKHSWGAIWRKDSDKPLKG-PLTVRLTTEGGTKSVYDDVIPANWKANTAYT 268          
The following BLAST results are available for this feature:
BLAST of FC888646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
EXPB1_MAIZE2.056e-1528.05Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXPB9_MAIZE2.686e-1527.64Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXPB1_ARATH3.508e-1528.76Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
EXB16_ORYSJ5.983e-1529.31Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB12_ORYSJ7.814e-1529.11Expansin-B12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB2_ARATH1.021e-1428.33Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
EXPB8_ORYSJ1.333e-1427.12Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB11_MAIZE2.274e-1426.67Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXPB9_ORYSJ3.878e-1426.83Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_MAIZE6.615e-1427.80Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA28BE04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA28BE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888646 ID=FC888646; Name=FC888646; organism=Citrus clementina; type=EST; length=856bp
CTTCCAATTTCTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTTGGGT
TTCCTTGCATTGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGTGGAT
TAATGCTCGTGCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACTATGG
GTGGGGCTTGTGGCTATGGGAATCTGTATAGCCAGGGTTATGGAACGAAC
ACTGCAGCCTTGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTC
TTGCTATGAGATTAAGTGTGTTAATGACCCCAAATGGTGCCTGCCCGGCA
CCATTATGGTCACAGCTACCAATTTTTGCCCACCGAACAACGCCCTTCCC
AACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCTCTC
TCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCCCTG
TAGCTTACAGGAGGGTACCCTGCGGAAGAAGGGGAGGCATCAGGTTCACA
ATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCACCAACGTTGGTGG
TGCTGGTGATGTTCATGCTGTTTCAATCAAAGGATCTAGAACTGGCTGGC
AGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAAAGCAACACTTATCTC
AATGGCCAAAGCCTGTCATTTGAGGTCACCACAAGCGATGGCCGTACTGT
GACTTCCTACAATGTTGCCCCTGCTGGCTGGTCCTTTGGCCGAACTTACT
CCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAGAGATTGGGTTTT
AACACCTTTTTTACCTATATATTCGTGTACTAAATAATAAATTTTAATAT
GAAATT
back to top