FC888648

Overview
NameFC888648
Unique NameFC888648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length833
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC888648_ssr1 microsatellite FC888648_ssr1:1..28. BLAST: Citrus ESTs to Prunus persica proteins V1
FC888648_ssr95 microsatellite FC888648_ssr95:95..109. BLAST: Citrus ESTs to Prunus persica proteins V1
FC888648_ssr216 microsatellite FC888648_ssr216:216..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9230 contig Ccv1_Contig9230:333..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_FERNB (Adenylate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=adk PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.862e-30
Identity = 74/189 (39.15%), Postives = 108/189 (57.14%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            +FLG PG GKGTYA R+     +PHI+TGD+ R+ +A    L  ++ +IV+ G LV DE+   L+ +RL+  + K   GFILDG+PRT+ QA+ L  +      ++D  I  ++ EE ++ +   RR+CS+CG  YNV  +  K E                C   LI R DDKE++VR R R+Y EK+
Sbjct:    4 IFLGPPGAGKGTYAKRVVEKYIIPHISTGDIFREAIAKGTELGRKVQDIVNSGNLVPDELTNALVEERLKQDDCK--KGFILDGYPRTLNQAQALNEMLKKMGKELDGAIYFEVDEETVVQRISTRRVCSKCGKVYNVITLPSKVEG-----------ICDDCGGTLIQRDDDKEDIVRSRYRVYIEKT 179          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_ANATD (Adenylate kinase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=adk PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.862e-30
Identity = 71/190 (37.37%), Postives = 109/190 (57.37%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + LG PG GKGT A  LS    +PHI+TGD++R+ + +   L  +  E + +G LV DEI+I ++  RL   + K   GF+LDGFPRT+ QAE L+ V +     ID V+N+++ +E +L +  GRRIC  CG +++V     + E                C  +L  R DDKEE V++RL +Y+ +++
Sbjct:    4 ILLGAPGAGKGTQAEYLSKRFSIPHISTGDILRENVKNETELGKKAKEYMDKGLLVPDEIVIEIVKDRLSKEDCKN--GFLLDGFPRTIAQAEALDKVLEELGQKIDKVLNIEVPDEKILERMSGRRICKNCGASFHVIYRPPQKEG-----------VCDVCGGELYQREDDKEETVKKRLEVYHAQTQ 180          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_THEM4 (Adenylate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=adk PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.376e-30
Identity = 70/189 (37.04%), Postives = 111/189 (58.73%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            VFLG PG GKGTYA  L  +LG+PHI+TGD+ R+E+++   L  ++++I+ +G+LV D++   ++ +RL   + K   GFILDG+PRTV QA+ L+ +      ++   I  ++ E+ ++ +   RRIC  CG  YN+  +  K  NG              C  +L  R DD+EEVVR R ++Y + +
Sbjct:    4 VFLGPPGAGKGTYAKELKEILGIPHISTGDMFREEISAKSELGRKVEDILKRGELVPDDLTNVIVKERLSKPDCK--KGFILDGYPRTVAQAKALDEILKKLGRELKFAIYFEVSEDVVVKRISNRRICKNCGKIYNLITLPPK-INGKCDV----------CGGELYQREDDREEVVRRRYKVYMDNT 179          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_KOSOT (Adenylate kinase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=adk PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.376e-30
Identity = 72/189 (38.10%), Postives = 109/189 (57.67%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            + LG PG GKGT A +++   G+PHI+TGD++R+ +A+   L  ++ EI+ +G LV D++++ ++  RL+  ++    GFILDGFPRTV+QAE L G+      ++D VI +   EE ++ +   RR+C  CG  YN+  I  K +                C   LI R DDK   VRER R+Y EK+
Sbjct:    4 ILLGPPGAGKGTQAKKIAMRYGIPHISTGDMLREAVAAGTELGKKVKEIIEKGLLVPDDLMVAIVEDRLKKPDS--AKGFILDGFPRTVQQAESLSGILGNLGKELDAVILIDAPEEVVVERISSRRVCPSCGKVYNLLTIKPKND-----------MLCDDCNIGLIQREDDKPATVRERYRVYMEKT 179          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_THENN (Adenylate kinase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=adk PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.088e-29
Identity = 73/191 (38.22%), Postives = 108/191 (56.54%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            VFLG PG GKGTYA R+    G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+   +     +   +   + E+ ++ +   RRIC +CG  YN+  +  K +                C  KL+ R DDKEE VR R ++Y EK++
Sbjct:    6 VFLGPPGAGKGTYAKRIQEKTGIPHISTGDIFRDIVKKENDELGKKIKEIMEKGELVPDELVNEVVKRRL--SEKDCEKGFILDGYPRTVAQAEFLDSFLESQNKQLTAAVLFDVPEDVVVQRLTSRRICPKCGRIYNMISLPPKEDE-----------LCDDCKVKLVQRDDDKEETVRHRYKVYLEKTQ 183          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_THENE (Adenylate kinase OS=Thermotoga neapolitana GN=adk PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.088e-29
Identity = 73/191 (38.22%), Postives = 108/191 (56.54%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            VFLG PG GKGTYA R+    G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+   +     +   +   + E+ ++ +   RRIC +CG  YN+  +  K +                C  KL+ R DDKEE VR R ++Y EK++
Sbjct:    6 VFLGPPGAGKGTYAKRIQEKTGIPHISTGDIFRDIVKKENDELGKKIKEIMEKGELVPDELVNEVVKRRL--SEKDCEKGFILDGYPRTVAQAEFLDSFLESQNKQLTAAVLFDVPEDVVVQRLTSRRICPKCGRIYNMISLPPKEDE-----------LCDDCKVKLVQRDDDKEETVRHRYKVYLEKTQ 183          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_CLOTH (Adenylate kinase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=adk PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.423e-29
Identity = 70/189 (37.04%), Postives = 108/189 (57.14%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            V LG PG GKGT A  +S    VPHI+TGD+ R  + +   L  +  E + +G LV DE+ ++++  R+   + K  AGFILDGFPRT+ QAE L+ +      ++D  +N+ + +E ++ +  GRR+CS+CG +Y++     K EN               C  +LI R DDKEE V +RL  Y++++
Sbjct:    4 VLLGAPGAGKGTQAVVISQKYNVPHISTGDIFRSNIKNGTELGRKAKEYIDKGLLVPDELTVDIVKDRISQPDCK--AGFILDGFPRTIYQAERLDEILKELNVELDCALNIYVPDEEIIKRMSGRRVCSKCGMSYHIVYNQPKVEN-----------ICDSCNGELIQRDDDKEETVIQRLNTYHKQT 179          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_CLOTE (Adenylate kinase OS=Clostridium tetani GN=adk PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.423e-29
Identity = 72/192 (37.50%), Postives = 109/192 (56.77%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE-------GVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + LG PG GKGT A  +S    +PHI+TGD+ R  +++  PL  +    + +G+LV DE+ I ++  RL  GE   + GF+LDGFPRTV+QAE L+         TD  L+I++   +E +L +  GRR+C ECG +Y++  I  K E                C  KL+ R DD +E V ERL +Y+++++
Sbjct:    4 ILLGPPGAGKGTQAKLISEKYSIPHISTGDIFRKNISNKTPLGMEAKSYMDKGQLVPDELTIEIVKDRL--GEEDCKNGFLLDGFPRTVKQAEALDEFLQNKSSKTDAALLIDVP--QELILERMTGRRVCGECGASYHIKFITPKTEG-----------VCDLCGGKLVQRKDDTKETVLERLEVYSKQTQ 180          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_CLOPE (Adenylate kinase OS=Clostridium perfringens GN=adk PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.164e-29
Identity = 71/193 (36.79%), Postives = 108/193 (55.96%), Query Frame = 1
Query:  268 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-----EGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            V+ V LG PG GKGT A  +SN   +PHI+TGD+ R  ++ + PL  +    +  G+LV DE+ IN++  RL+  + K   G++LDGFPRTV QAE L     E    ID  + +++ +E +L +  GRR+C  CG +Y++   +    +G              C S +I R DD EE V+ERL +Y  +++
Sbjct:    3 VKIVLLGPPGAGKGTQAKSISNRYSIPHISTGDIFRKNISENTPLGIEAKSYMDNGQLVPDEVTINMVKDRLQQDDCKN--GYLLDGFPRTVHQAEALDNFLTEREESIDTALLIEVPKEFILERMTGRRVCPSCGASYHIK-FNPPTNDGKCDL----------CGSDVIQRKDDTEETVKERLDVYENQTQ 182          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_THELT (Adenylate kinase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=adk PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.133e-29
Identity = 75/187 (40.11%), Postives = 107/187 (57.22%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQA----EILEGVT-DIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNE 822
            V LG PG GKGT A  LS +  VPHI+TGD+ R+ +A+   L  ++  I+S G LV DEI+  ++ +RL   +   E GFI DG+PRT+ QA    EIL+ ++  +DL I L+  EE ++ +   RRIC +CG  YN+  +    +                C  +L+ R DDKEEVVR+R R+Y E
Sbjct:    4 VLLGAPGAGKGTLAKDLSIMFSVPHISTGDMFREAVAAGTELGVKVQNILSSGALVPDEIVNQVVEERLRKQDC--EKGFIFDGYPRTIAQAIALDEILQKMSKKLDLAIYLEASEETVVKRLTSRRICPKCGKIYNLISMPPVSDQ-----------ICDDCGEQLVIREDDKEEVVRKRYRLYLE 177          
The following BLAST results are available for this feature:
BLAST of FC888648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_FERNB2.862e-3039.15Adenylate kinase OS=Fervidobacterium nodosum (stra... [more]
KAD_ANATD2.862e-3037.37Adenylate kinase OS=Anaerocellum thermophilum (str... [more]
KAD_THEM46.376e-3037.04Adenylate kinase OS=Thermosipho melanesiensis (str... [more]
KAD_KOSOT6.376e-3038.10Adenylate kinase OS=Kosmotoga olearia (strain TBF ... [more]
KAD_THENN1.088e-2938.22Adenylate kinase OS=Thermotoga neapolitana (strain... [more]
KAD_THENE1.088e-2938.22Adenylate kinase OS=Thermotoga neapolitana GN=adk ... [more]
KAD_CLOTH2.423e-2937.04Adenylate kinase OS=Clostridium thermocellum (stra... [more]
KAD_CLOTE2.423e-2937.50Adenylate kinase OS=Clostridium tetani GN=adk PE=3... [more]
KAD_CLOPE3.164e-2936.79Adenylate kinase OS=Clostridium perfringens GN=adk... [more]
KAD_THELT4.133e-2940.11Adenylate kinase OS=Thermotoga lettingae (strain A... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA28BE05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA28BE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888648 ID=FC888648; Name=FC888648; organism=Citrus clementina; type=EST; length=833bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTC
GGTATTAAGCCGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGGCGACGA
CGACGACGACGTCGTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCA
ACTTCTTGTGAAAATACCGGAATTGACCCCAAAGCAAAAGCAGGAGCAGC
GGCGGCGCTGCCGCTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGA
AGGGCGAGGGCAAACATGTCCAGTGGGTTTTTCTTGGCTGCCCAGGCGTG
GGCAAAGGTACTTATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCA
CATCGCCACCGGTGATCTCGTTCGTGACGAGCTCGCTTCCTCGGGCCCAC
TCTCCTCTCAGCTTGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGAT
GAAATTATAATAAATTTATTGTCCAAGCGTCTTGAAGCTGGTGAAGCTAA
GGGTGAAGCTGGGTTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGG
CGGAAATATTGGAGGGAGTTACTGACATTGACTTGGTGATTAACCTAAAG
CTTCGAGAGGAGGCATTGCTTGCAAAATGCCTCGGAAGAAGAATATGTAG
TGAATGTGGAGGAAACTACAACGTTGCCTGTATTGACATCAAGGGTGAAA
ATGGGAACCCTGGAATGTACATGGGTCCACTTCTTCCCCCACCACATTGT
GCATCAAAGCTTATCACTCGTTCTGATGACAAAGAAGAAGTTGTTAGAGA
GCGACTTCGCATATATAATGAGAAGAGTCGACC
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