FC888648

Overview
NameFC888648
Unique NameFC888648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length833
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC888648_ssr1 microsatellite FC888648_ssr1:1..28. BLAST: Citrus ESTs to Prunus persica proteins V1
FC888648_ssr95 microsatellite FC888648_ssr95:95..109. BLAST: Citrus ESTs to Prunus persica proteins V1
FC888648_ssr216 microsatellite FC888648_ssr216:216..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9230 contig Ccv1_Contig9230:333..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_DEHSC (Adenylate kinase OS=Dehalococcoides sp. (strain CBDB1) GN=adk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.574e-20
Identity = 64/190 (33.68%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDI-KGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            +FLG PG GKGT    ++  L + H+ATGDL R  +     L   +   + +G+LV DEI I+++ K L         G ILDGFPR++RQAE L+         I  VI + +  + L+ +  GR +C  C   Y   C ++ KG+                C   L  R DD  E V+ERL++Y  K+
Sbjct:    5 IFLGAPGSGKGTQGEVVAKELKLAHMATGDLFRKAIECGDELGDTVKSYMERGELVPDEITISVVLKHLAG--LTDVTGIILDGFPRSLRQAEALDEALVQQGQGIGRVIYINVPGDELVRRLSGRWVCRSCQSPYQSGCAEVTKGK-------------CSRCQGGLYQRPDDTPETVKERLKVYFSKT 179          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_DECAR (Adenylate kinase OS=Dechloromonas aromatica (strain RCB) GN=adk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.574e-20
Identity = 58/186 (31.18%), Postives = 98/186 (52.69%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + LG PG GKGT A+ +S   G+P I+TGD++R ++ +   L  +  + +  G LV D +II ++  RL   + K   G++ DGFPRT+ QA+ ++     I+ V+ + + +  ++ +  GRR     G  Y+V     K E  +                 L+ R DDKEE V++RL IY+ +++
Sbjct:    4 ILLGAPGAGKGTQATFISKQFGIPQISTGDMLRAQVKAGTALGLEAKKHMDAGGLVPDAVIIGMVKDRLTQDDCKN--GYLFDGFPRTIPQAQAMKDAGVPIEFVLEIDVPDSDIVERMAGRRAHLASGRTYHVKFNPPKVEGIDDV-----------TGEPLVQRDDDKEETVKKRLEIYHSQTK 176          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_CHLTR (Adenylate kinase OS=Chlamydia trachomatis GN=adk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.574e-20
Identity = 62/200 (31.00%), Postives = 102/200 (51.00%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGE-----------AKGEAGFILDGFPRTVRQAEILEGVTDIDL----VINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + +G PG GKGT +  L++ L + HI++GDL+RD ++   PLS ++   + QGKL+ D ++  L+ ++L+  +           ++ E   ILDGFPRTV QA++L            VI L + +E +L +   R IC  C G YN                         C+ +LI RSDD  EV+ +R++ Y ++++
Sbjct:    9 IIMGAPGSGKGTQSKLLASQLSLLHISSGDLLRDAVSKDTPLSQEIKSYLDQGKLLPDTLVWKLVHEKLDEFQQDTLLRRLSFLSRSENSAILDGFPRTVTQAKLLHEFLSSYFPNYKVILLDISDEEVLNRLTSRYICPACQGIYN---------------EQQGFSSCPKCSVELIRRSDDTLEVILDRIQTYKQETQ 193          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_CHLTA (Adenylate kinase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=adk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.574e-20
Identity = 62/200 (31.00%), Postives = 102/200 (51.00%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGE-----------AKGEAGFILDGFPRTVRQAEILEGVTDIDL----VINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + +G PG GKGT +  L++ L + HI++GDL+RD ++   PLS ++   + QGKL+ D ++  L+ ++L+  +           ++ E   ILDGFPRTV QA++L            VI L + +E +L +   R IC  C G YN                         C+ +LI RSDD  EV+ +R++ Y ++++
Sbjct:    9 IIMGAPGSGKGTQSKLLASQLSLLHISSGDLLRDAVSKDTPLSQEIKSYLDQGKLLPDTLVWKLVHEKLDEFQQDTLLRRLSFLSRSENSAILDGFPRTVTQAKLLHEFLSSYFPNYKVILLDISDEEVLNRLTSRYICPACQGIYN---------------EQQGFSSCPKCSVELIRRSDDTLEVILDRIQTYKQETQ 193          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_SYNPX (Adenylate kinase OS=Synechococcus sp. (strain WH8102) GN=adk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.056e-20
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            +FLG PG GKGT A+RL N  G+ H++TGDL+R E+A+   L  + + ++++G+LVSD +++ ++  +L+ G + G  G++LDGFPRTV QA+ LE + D     I+ V+ L+L +  L+ + L R                                           R DD E V+R RL +Y EK+
Sbjct:    6 LFLGPPGAGKGTQAARLCNANGMSHLSTGDLLRSEVAAGTALGQEAEAVMNRGELVSDALVLAIVESQLK-GLSSG--GWLLDGFPRTVPQADALEPLLDELKQPIEAVVLLELDDAVLIERLLAR------------------------------------------GRDDDNEAVIRNRLEVYREKT 149          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_STRLI (Adenylate kinase (Fragment) OS=Streptomyces lividans GN=adk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.056e-20
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLAKCLGRRIC-SECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            V +G PG GKGT A+RL+  L +PHI+TGDL R  ++    L       +  G LV DE+ I   +    A  +     F+LDGFPR V QAE L+ + +     +D V++L+  E+ ++ +  GRR+C ++    ++V     K E                C  +L  R DD EE VR+RL +Y+ ++
Sbjct:    4 VLVGPPGAGKGTQATRLAETLHIPHISTGDLFRANISQQTELGKLAKSYMDAGNLVPDEVTI---AMDRTAWSSPTPRAFLLDGFPRNVSQAEALDELLETEDMKLDAVLDLEAPEDEVVKRIAGRRVCRNDSAHVFHVTYTPPKKEG-----------VCDVCGGELYQRDDDSEETVRKRLEVYHTQT 179          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_HAMD5 (Adenylate kinase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=adk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.056e-20
Identity = 61/185 (32.97%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-EGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            + LG PG GKGT A  +    G+  I+TGD++R  + +   L  Q+  I++ GKLV+D+++I L+ +R+   + K   GF+LDGFPRT+ QA+ + E    ID V+ L + +E ++ +  GRR+    G  Y++     K  + +                 L  R DD+E  VRERL  Y++++
Sbjct:    4 ILLGAPGAGKGTQAQFIMKKYGIVQISTGDMLRAAVKAGTKLGQQVQGIMAAGKLVTDDLVIALVKERIRQEDCK--EGFLLDGFPRTIPQADAMAEADIKIDYVLELVVPDEFIVERISGRRVHMPSGRIYHLKFNPPKITDKDDM-----------TGESLTLRKDDQETTVRERLLEYHQQT 175          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_COREF (Adenylate kinase OS=Corynebacterium efficiens GN=adk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.056e-20
Identity = 63/189 (33.33%), Postives = 90/189 (47.62%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            V LG PG GKGT A+ LS  LG+PHI+TGDL R  +    PL  +  + +  GKLV  ++   ++  RL   EA    GF+LDGFPRTV QA+IL  + D     +D VIN ++ E+ ++ + L R                                           R+DD EE +R RL +Y +++
Sbjct:    4 VLLGPPGAGKGTQAAILSEKLGIPHISTGDLFRANIGEGTPLGIEAKQYIDAGKLVPTDVTARMVQSRL--AEADAAEGFLLDGFPRTVEQADILADLLDKAGNPLDGVINYQVSEDVVVERMLSR------------------------------------------GRADDNEETIRTRLGVYRDET 148          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_RICRS (Adenylate kinase OS=Rickettsia rickettsii (strain Sheila Smith) GN=adk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.685e-20
Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEG-VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLIT-RSDDKEEVVRERLRIYNEKS 828
            +FLG PG GKGT   +++  + +PHIA GD+ R  + +S   +  ++  V QG+L+ +EI+  ++   L + E K   G+ILDG+PR + QA+  E  + +   +I   +  E L+ + LGR  C  CG  YN   +  K +N               C S     R DD EEV+++R+ +Y  ++
Sbjct:    4 IFLGPPGAGKGTQGKKIAKKIDLPHIAIGDIFRTIIKTSTSEAELINNYVRQGELIPNEIVNQVIKNFLLSFEYKN--GYILDGYPRNLEQAQFFESFIKEKIKIIYFDVSGELLIKRILGRYSCKNCGKIYNRYFLQPKTDN-----------VCDVCGSSTFDYRKDDNEEVIKKRIEVYKTET 176          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_RICRO (Adenylate kinase OS=Rickettsia rickettsii (strain Iowa) GN=adk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.685e-20
Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEG-VTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLIT-RSDDKEEVVRERLRIYNEKS 828
            +FLG PG GKGT   +++  + +PHIA GD+ R  + +S   +  ++  V QG+L+ +EI+  ++   L + E K   G+ILDG+PR + QA+  E  + +   +I   +  E L+ + LGR  C  CG  YN   +  K +N               C S     R DD EEV+++R+ +Y  ++
Sbjct:    4 IFLGPPGAGKGTQGKKIAKKIDLPHIAIGDIFRTIIKTSTSEAELINNYVRQGELIPNEIVNQVIKNFLLSFEYKN--GYILDGYPRNLEQAQFFESFIKEKIKIIYFDVSGELLIKRILGRYSCKNCGKIYNRYFLQPKTDN-----------VCDVCGSSTFDYRKDDNEEVIKKRIEVYKTET 176          
The following BLAST results are available for this feature:
BLAST of FC888648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_DEHSC1.574e-2033.68Adenylate kinase OS=Dehalococcoides sp. (strain CB... [more]
KAD_DECAR1.574e-2031.18Adenylate kinase OS=Dechloromonas aromatica (strai... [more]
KAD_CHLTR1.574e-2031.00Adenylate kinase OS=Chlamydia trachomatis GN=adk P... [more]
KAD_CHLTA1.574e-2031.00Adenylate kinase OS=Chlamydia trachomatis (strain ... [more]
KAD_SYNPX2.056e-2033.33Adenylate kinase OS=Synechococcus sp. (strain WH81... [more]
KAD_STRLI2.056e-2033.16Adenylate kinase (Fragment) OS=Streptomyces livida... [more]
KAD_HAMD52.056e-2032.97Adenylate kinase OS=Hamiltonella defensa subsp. Ac... [more]
KAD_COREF2.056e-2033.33Adenylate kinase OS=Corynebacterium efficiens GN=a... [more]
KAD_RICRS2.685e-2031.72Adenylate kinase OS=Rickettsia rickettsii (strain ... [more]
KAD_RICRO2.685e-2031.72Adenylate kinase OS=Rickettsia rickettsii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA28BE05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA28BE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888648 ID=FC888648; Name=FC888648; organism=Citrus clementina; type=EST; length=833bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTC
GGTATTAAGCCGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGGCGACGA
CGACGACGACGTCGTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCA
ACTTCTTGTGAAAATACCGGAATTGACCCCAAAGCAAAAGCAGGAGCAGC
GGCGGCGCTGCCGCTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGA
AGGGCGAGGGCAAACATGTCCAGTGGGTTTTTCTTGGCTGCCCAGGCGTG
GGCAAAGGTACTTATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCA
CATCGCCACCGGTGATCTCGTTCGTGACGAGCTCGCTTCCTCGGGCCCAC
TCTCCTCTCAGCTTGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGAT
GAAATTATAATAAATTTATTGTCCAAGCGTCTTGAAGCTGGTGAAGCTAA
GGGTGAAGCTGGGTTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGG
CGGAAATATTGGAGGGAGTTACTGACATTGACTTGGTGATTAACCTAAAG
CTTCGAGAGGAGGCATTGCTTGCAAAATGCCTCGGAAGAAGAATATGTAG
TGAATGTGGAGGAAACTACAACGTTGCCTGTATTGACATCAAGGGTGAAA
ATGGGAACCCTGGAATGTACATGGGTCCACTTCTTCCCCCACCACATTGT
GCATCAAAGCTTATCACTCGTTCTGATGACAAAGAAGAAGTTGTTAGAGA
GCGACTTCGCATATATAATGAGAAGAGTCGACC
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