FC888648

Overview
NameFC888648
Unique NameFC888648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length833
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC888648_ssr1 microsatellite FC888648_ssr1:1..28. BLAST: Citrus ESTs to Prunus persica proteins V1
FC888648_ssr95 microsatellite FC888648_ssr95:95..109. BLAST: Citrus ESTs to Prunus persica proteins V1
FC888648_ssr216 microsatellite FC888648_ssr216:216..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9230 contig Ccv1_Contig9230:333..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_HYDS0 (Adenylate kinase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=adk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.528e-26
Identity = 67/189 (35.45%), Postives = 101/189 (53.44%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            V LG PG GKGT  + L + L   HI+TGD++R E++   PL  + +E + QG LV D++II ++   L     K    ++ DGFPR V QAE  E + +     +D V    L ++ ++ +  GRR+C +CG  YN+     K +               + A+ LI R DDKEEV+  RLR+Y E++
Sbjct:    4 VLLGPPGSGKGTQGALLKSELSFEHISTGDMLRAEVSKKSPLGLKAEEYMKQGLLVPDDLIIAMIKNILTEAPHK---NYVFDGFPRNVNQAEAFETMLNTMRLQVDKVFYFDLEDDVIIKRLSGRRVCPKCGATYNIYYQKPKNDT-----------LCDNDATPLIQRDDDKEEVIVNRLRVYKEQT 178
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_CLOAB (Adenylate kinase OS=Clostridium acetobutylicum GN=adk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.528e-26
Identity = 64/189 (33.86%), Postives = 102/189 (53.97%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            + LG PG GKGT A  +S+   +PHI+TGD+ R  ++    L  +    + +G LV DE+ I+++  R+   + K  +GF+LDGFPRTV QAE L+         ID  + + +  E +  +  GRR+CS+CG +Y++     K E                C S ++ R DD E+ V+ERL +Y+ ++
Sbjct:    4 ILLGPPGAGKGTQAKLISSEFSIPHISTGDIFRANISGKTELGMKAKGYMDKGLLVPDELTIDIVKDRISKDDCK--SGFLLDGFPRTVNQAEALDKFLVGRKEKIDCALLIDVPREKIFNRMTGRRVCSKCGASYHIEYNPTKVEG-----------ICDLCGSPVVQRKDDSEDTVKERLDVYDRQT 179
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_VIBHB (Adenylate kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=adk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.244e-25
Identity = 66/185 (35.68%), Postives = 103/185 (55.68%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            + LG PG GKGT A+ + +  G+P I+TGD++R  + +   L  Q   ++  G+LVSDEII+ L+ +R+   +   E GF+LDGFPRT+ QA+ L+ +  D+D VI   + ++ ++ +  GRR     G  Y+V     K E  +                 L+ R DDKEE VR RL +Y+E++
Sbjct:    4 ILLGAPGAGKGTQANFIMDKYGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDEIILGLIKERIAQDDC--EKGFLLDGFPRTIPQADGLKEMGVDVDYVIEFDVADDVIVERMAGRRAHLPSGRTYHVVYNPPKVEGKDDV-----------TGEDLVVRDDDKEETVRARLGVYHEQT 175
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_STAAW (Adenylate kinase OS=Staphylococcus aureus (strain MW2) GN=adk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.244e-25
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+ +  GRRIC  CG  Y++     K E                   KL  R DD  E V  RL +  ++S+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEG-----------ICDIDGGKLYQREDDNPETVANRLSVNIKQSK 180
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_STAAS (Adenylate kinase OS=Staphylococcus aureus (strain MSSA476) GN=adk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.244e-25
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+ +  GRRIC  CG  Y++     K E                   KL  R DD  E V  RL +  ++S+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEG-----------ICDIDGGKLYQREDDNPETVANRLSVNIKQSK 180
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_STAAR (Adenylate kinase OS=Staphylococcus aureus (strain MRSA252) GN=adk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.244e-25
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+ +  GRRIC  CG  Y++     K E                   KL  R DD  E V  RL +  ++S+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEG-----------ICDIDGGKLYQREDDNPETVANRLSVNIKQSK 180
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_STAAN (Adenylate kinase OS=Staphylococcus aureus (strain N315) GN=adk PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.244e-25
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+ +  GRRIC  CG  Y++     K E                   KL  R DD  E V  RL +  ++S+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEG-----------ICDIDGGKLYQREDDNPETVANRLSVNIKQSK 180
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_STAAM (Adenylate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=adk PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.244e-25
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+ +  GRRIC  CG  Y++     K E                   KL  R DD  E V  RL +  ++S+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEG-----------ICDIDGGKLYQREDDNPETVANRLSVNIKQSK 180
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_STAAC (Adenylate kinase OS=Staphylococcus aureus (strain COL) GN=adk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.244e-25
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + +G PG GKGT AS +     +PHI+TGD+ R  +     L  +    + +G+LV DE+ + ++ +R+   +AK   GF+LDGFPRT+ QAE L  +      +ID VIN+++ EE L+ +  GRRIC  CG  Y++     K E                   KL  R DD  E V  RL +  ++S+
Sbjct:    4 ILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAK--KGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEG-----------ICDIDGGKLYQREDDNPETVANRLSVNIKQSK 180
[Close]
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_RALSO (Adenylate kinase OS=Ralstonia solanacearum GN=adk PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.625e-25
Identity = 66/186 (35.48%), Postives = 101/186 (54.30%), Query Frame = 1 
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + LG PG GKGT A  +    G+P I+TGD++R  + +  PL  +  +++  G LVSD+III L+  RL+  + K   G++ DGFPRT+ QAE ++     ID V+ + +  +A++ +  GRR+    G  Y+V     K E  +                 LI R DDKEE VR+RL +Y  ++R
Sbjct:    4 ILLGAPGAGKGTQAKFICERFGIPQISTGDMLRAAVKAGTPLGIEAKKVMDAGGLVSDDIIIGLVKDRLQQSDCKN--GYLFDGFPRTIPQAEAMKDAGVPIDYVLEIDVPFDAIIERMSGRRVHVASGRTYHVKYNPPKNEGQD-----------DETGDPLIQRDDDKEETVRKRLSVYENQTR 176
The following BLAST results are available for this feature:
BLAST of FC888648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_HYDS09.528e-2635.45Adenylate kinase OS=Hydrogenobaculum sp. (strain Y... [more]
KAD_CLOAB9.528e-2633.86Adenylate kinase OS=Clostridium acetobutylicum GN=... [more]
KAD_VIBHB1.244e-2535.68Adenylate kinase OS=Vibrio harveyi (strain ATCC BA... [more]
KAD_STAAW1.244e-2534.74Adenylate kinase OS=Staphylococcus aureus (strain ... [more]
KAD_STAAS1.244e-2534.74Adenylate kinase OS=Staphylococcus aureus (strain ... [more]
KAD_STAAR1.244e-2534.74Adenylate kinase OS=Staphylococcus aureus (strain ... [more]
KAD_STAAN1.244e-2534.74Adenylate kinase OS=Staphylococcus aureus (strain ... [more]
KAD_STAAM1.244e-2534.74Adenylate kinase OS=Staphylococcus aureus (strain ... [more]
KAD_STAAC1.244e-2534.74Adenylate kinase OS=Staphylococcus aureus (strain ... [more]
KAD_RALSO1.625e-2535.48Adenylate kinase OS=Ralstonia solanacearum GN=adk ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA28BE05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA28BE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888648 ID=FC888648; Name=FC888648; organism=Citrus clementina; type=EST; length=833bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTC
GGTATTAAGCCGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGGCGACGA
CGACGACGACGTCGTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCA
ACTTCTTGTGAAAATACCGGAATTGACCCCAAAGCAAAAGCAGGAGCAGC
GGCGGCGCTGCCGCTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGA
AGGGCGAGGGCAAACATGTCCAGTGGGTTTTTCTTGGCTGCCCAGGCGTG
GGCAAAGGTACTTATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCA
CATCGCCACCGGTGATCTCGTTCGTGACGAGCTCGCTTCCTCGGGCCCAC
TCTCCTCTCAGCTTGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGAT
GAAATTATAATAAATTTATTGTCCAAGCGTCTTGAAGCTGGTGAAGCTAA
GGGTGAAGCTGGGTTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGG
CGGAAATATTGGAGGGAGTTACTGACATTGACTTGGTGATTAACCTAAAG
CTTCGAGAGGAGGCATTGCTTGCAAAATGCCTCGGAAGAAGAATATGTAG
TGAATGTGGAGGAAACTACAACGTTGCCTGTATTGACATCAAGGGTGAAA
ATGGGAACCCTGGAATGTACATGGGTCCACTTCTTCCCCCACCACATTGT
GCATCAAAGCTTATCACTCGTTCTGATGACAAAGAAGAAGTTGTTAGAGA
GCGACTTCGCATATATAATGAGAAGAGTCGACC
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