FC888656
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: CSN5_SCHPO (COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe GN=csn5 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.100e-23 Identity = 72/186 (38.71%), Postives = 103/186 (55.38%), Query Frame = 3 Query: 156 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQTMMLGQEPRQTTSNLGH-----LNKPSIQALIHGLNRH-YYSIAINY 686 V IS++ALLKML+H G+P+EVMG + G+ V+ ++ ++D FA+P GT V A + + + K R E V+GWYHSHP +GCWLSGVD+ TQ+ + VAVV+DP +S++ V I AFR T +G + T + H N PS + G + YYS+ I Y Sbjct: 35 VKISAVALLKMLRHVSQGMPLEVMGYVQGK-VEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIGAFR-----TYPVGNDGSIRTKSRHHPSVLFKNLPSSKIEDAGAHAEAYYSLPITY 214
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: CSN5_CANAL (COP9 signalosome complex subunit 5 OS=Candida albicans GN=RRI1 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.180e-23 Identity = 55/140 (39.29%), Postives = 90/140 (64.29%), Query Frame = 3 Query: 159 YISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGR------PEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLIN 557 YISSLAL+KM H + G +E+MG+++G+ + +++ V+D + +P GT V A + + T M++ L + + E +VGWYH HP +GCWL G+D++TQ + L +A+VVDP++++K GKV I AFR ++ Sbjct: 76 YISSLALMKMCTHAQTGGSIEIMGMLVGK-ISGHSIIVMDTYRLPVEGTETRVNAQNEAY-TYMVEYLTERQQLSNGKNEENIVGWYHRHPRYGCWLKGIDVSTQSLNQGLQDPYLAIVVDPVKTLKQGKVEIGAFRNVS 213
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii GN=RRI1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20 Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 150 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPE--MVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQS-VKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGH 614 ++ +S+LA +K+L+H G MEV+G++LG DE V VVD + +P GT V A ++ + + +T PE +VGWYHSHPG+GCWLSG+D TQ + +A+VVDP +S G + I AFR + S GH Sbjct: 71 QKAALSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIV-VVDSYRLPVEGTETRVNAQMESYEYTVQYL--ETAVPEGLAIVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPETADTRSVSSHSNASRYGH 225
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis GN=RRI1 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.374e-18 Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 3 Query: 150 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLI 554 ++ IS LA KML H G +EVMG+++G ++ V V D +++P GT V A ++ + + + + +VGWYHSHPG+GCWLS +DI TQ + +A+VVDP +S+ G + I AFR + Sbjct: 64 QKCLISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIV-VKDCYSLPVQGTETRVNAHMESYEYMVQYLDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTL 198
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: CSN5_YEAST (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae GN=RRI1 PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 4.949e-16 Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 3 Query: 129 SPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA-----------VDHVFQTNML-DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQT 566 S + S V IS L+ K+ + G +E+MG+++G F + + V+D F +P GT V A +D ++ N D G VVGW+HSHPG+ CWLS +DI TQ + VA+VVDP++S++ K++ + AFR I ++ Sbjct: 62 STDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMG-FTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIESKS 219
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS7 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRI1 PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 4.949e-16 Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 3 Query: 129 SPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA-----------VDHVFQTNML-DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQT 566 S + S V IS L+ K+ + G +E+MG+++G F + + V+D F +P GT V A +D ++ N D G VVGW+HSHPG+ CWLS +DI TQ + VA+VVDP++S++ K++ + AFR I ++ Sbjct: 62 STDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMG-FTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIESKS 219
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 4.949e-16 Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 3 Query: 129 SPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA-----------VDHVFQTNML-DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQT 566 S + S V IS L+ K+ + G +E+MG+++G F + + V+D F +P GT V A +D ++ N D G VVGW+HSHPG+ CWLS +DI TQ + VA+VVDP++S++ K++ + AFR I ++ Sbjct: 62 STDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMG-FTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIESKS 219
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata GN=RRI1 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15 Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 3 Query: 150 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSV----EAVDHVFQTNMLDMLKQTGRPEM---VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKG-KVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNK 623 + V +S LA K+L H G +EVMG++LG + T + D F +P GT V E+ +++ Q + + R E ++GWYHSHPG+ CWLS +D+ TQ + +A+VVDP +S KV I +FR Q TT LNK Sbjct: 72 QNVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGN-TFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQDQNDDTNFYELNTTVFDSELNK 236 The following BLAST results are available for this feature:
BLAST of FC888656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC888656 ID=FC888656; Name=FC888656; organism=Citrus clementina; type=EST; length=807bpback to top |