FC891026

Overview
NameFC891026
Unique NameFC891026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 64/167 (38.32%), Postives = 82/167 (49.10%), Query Frame = 2 
Query:    5 GERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEER-PYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHN--XXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLFLATVIKQ-FLNVGDRLFKYETPAVIR 493
            GER+  +RIYDY VYNDLG PD+   L RPVL G    PYPRR RTGR  T  +P  ESR +    VY+PRDE F  +K + F    LK+   N                 F  F D+  LY+ G  L  D      SK+    +  + F + G+   K+  P VI+
Sbjct:  201 GERQEWDRIYDYDVYNDLGAPDQKATLGRPVLGGSSTLPYPRRGRTGRKKTVKEPQSESRSD---TVYLPRDEAFGHVKSSDFLVYILKSASQNIVPQLRSVVTLQLNNPEFNTFEDVRSLYDGGIKLPTD----VLSKISPIPLFSELFRSDGEAALKFPPPKVIQ 360
The following BLAST results are available for this feature:
BLAST of FC891026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_LENCU9.510e-1938.32Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA2BF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA2BF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891026 ID=FC891026; Name=FC891026; organism=Citrus clementina; type=EST; length=753bp
AAAGGGCGAGAGAAAGCATCATGAGAGAATATATGATTATGCGGTCTATA
ATGATTTGGGTAATCCTGATAAAGACAAAGATCTTGCCAGGCCAGTTCTG
AGTGGTGAGGAAAGGCCTTATCCTAGGCGCTGTAGAACTGGCCGACCACC
AACCAAGACAGATCCTCTTTGTGAGAGTAGAATTGAAAAGCCCCATCCAG
TCTATGTACCTCGGGATGAAACTTTTGAGGAGATCAAGCAGAACACTTTC
TCTTCTGGGAGATTGAAAGCTGTACTCCATAATCTTATACCATCAATTGC
TGCTTCATTGTCAAGTTCGGATATCCCCTTCACATGCTTCTCCGATATTG
ATAAGTTATATAATAGTGGTTTTCTCTTAAAAGATGATGATGAACAAAAT
GGGAGGAGCAAGCTGTTTCTCGCTACTGTCATTAAACAGTTTCTGAATGT
CGGTGATAGATTATTTAAATATGAAACCCCAGCAGTTATAAGAAGTAAGT
TTGTCACCTTGTATCGTTCTTCCTAGAGATGTCAAAACAGTTGACAGCGA
TGCTGACTGAATACAGTTACATCACAATCTTGGACCAAATCTTTGTTACC
ATCATTTACTGATTCTGGGTTTATATTCTTGGGACATTCCTTTTCTTAGC
AGTTCAATTCCTTGAACACATAGCATTCATAACTTAGTCTAAAAGGAAAA
AGAAAAAGAATAAAAAATTCCTGGAATTTTCATTCTGCCTTTTATCATTA
TTG
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