FC891027

Overview
NameFC891027
Unique NameFC891027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC891027_ssr19 microsatellite FC891027_ssr19:19..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6843 contig Ccv1_Contig6843:8..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_BACHK (5-dehydro-2-deoxygluconokinase OS=Bacillus thuringiensis subsp. konkukian GN=iolC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.695e-23
Identity = 69/240 (28.75%), Postives = 121/240 (50.42%), Query Frame = 1 
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHP-NLKLLLVTLGEHGCRYYTK 804
            +++ G + +D     +   + E   F K  GG+PAN+AI  ARLG +  F+GK+ DD+ G  + G LK+N ++ D I  D  GA T LAF  +++  +   + YR+  AD+ L P E++ + I+ +K       +L   P R A   A++ A++   ++ +D + R   W S  E         +K++VI  +  E   +E L   +K +D+     W   + K++++  G  G   YT+
Sbjct:   14 LIAVGRLCVDLNANETQRPMEETRTFTKYVGGSPANIAIGAARLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIPIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSEAETAVYYNLAAEKSDVIIGTREEFDMMEKLLNYEKSNDQVTAERWFSHHAKIVVIKHGGDGSIAYTR 253
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_BACAN (5-dehydro-2-deoxygluconokinase OS=Bacillus anthracis GN=iolC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.695e-23
Identity = 69/240 (28.75%), Postives = 121/240 (50.42%), Query Frame = 1 
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHP-NLKLLLVTLGEHGCRYYTK 804
            +++ G + +D     +   + E   F K  GG+PAN+AI  ARLG +  F+GK+ DD+ G  + G LK+N ++ D I  D  GA T LAF  +++  +   + YR+  AD+ L P E++ + I+ +K       +L   P R A   A++ A++   ++ +D + R   W S  E         +K++VI  +  E   +E L   +K +D+     W   + K++++  G  G   YT+
Sbjct:   14 LIAVGRLCVDLNANETQRPMEETRTFTKYVGGSPANIAIGAARLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIPIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSEAETAVYYNLAAEKSDVIIGTREEFDMMEKLLNYEKSNDQVTAERWFSHHAKIVVIKHGGDGSIAYTR 253
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_BACAC (5-dehydro-2-deoxygluconokinase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=iolC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.695e-23
Identity = 69/240 (28.75%), Postives = 121/240 (50.42%), Query Frame = 1 
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHP-NLKLLLVTLGEHGCRYYTK 804
            +++ G + +D     +   + E   F K  GG+PAN+AI  ARLG +  F+GK+ DD+ G  + G LK+N ++ D I  D  GA T LAF  +++  +   + YR+  AD+ L P E++ + I+ +K       +L   P R A   A++ A++   ++ +D + R   W S  E         +K++VI  +  E   +E L   +K +D+     W   + K++++  G  G   YT+
Sbjct:   14 LIAVGRLCVDLNANETQRPMEETRTFTKYVGGSPANIAIGAARLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIPIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSEAETAVYYNLAAEKSDVIIGTREEFDMMEKLLNYEKSNDQVTAERWFSHHAKIVVIKHGGDGSIAYTR 253
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_BACAA (5-dehydro-2-deoxygluconokinase OS=Bacillus anthracis (strain A0248) GN=iolC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.695e-23
Identity = 69/240 (28.75%), Postives = 121/240 (50.42%), Query Frame = 1 
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHP-NLKLLLVTLGEHGCRYYTK 804
            +++ G + +D     +   + E   F K  GG+PAN+AI  ARLG +  F+GK+ DD+ G  + G LK+N ++ D I  D  GA T LAF  +++  +   + YR+  AD+ L P E++ + I+ +K       +L   P R A   A++ A++   ++ +D + R   W S  E         +K++VI  +  E   +E L   +K +D+     W   + K++++  G  G   YT+
Sbjct:   14 LIAVGRLCVDLNANETQRPMEETRTFTKYVGGSPANIAIGAARLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIPIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSEAETAVYYNLAAEKSDVIIGTREEFDMMEKLLNYEKSNDQVTAERWFSHHAKIVVIKHGGDGSIAYTR 253
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC1_BACCZ (5-dehydro-2-deoxygluconokinase 1 OS=Bacillus cereus (strain ZK / E33L) GN=iolC1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 68/240 (28.33%), Postives = 121/240 (50.42%), Query Frame = 1 
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHPN-LKLLLVTLGEHGCRYYTK 804
            +++ G + +D     +   + E   F K  GG+PAN+AI  ARLG +  F+GK+ DD+ G  + G LK+N ++ D I  D  GA T LAF  +++  +   + YR+  AD+ L P E++ + I+ +K       +L   P R A   A++ A++   ++ +D + R   W S  E         +K++VI  +  E   +E L   ++ +D+     W  +  K++++  G  G   YT+
Sbjct:   14 LIAVGRLCVDLNANETQRPMEETRTFTKYVGGSPANIAIGAARLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIRIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSEAETAVYYNLAAEKSDVIIGTREEFDMMEKLLNYEQSNDQVTAERWFSHYAKIVVIKHGGDGSIAYTR 253
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_LISMO (5-dehydro-2-deoxygluconokinase OS=Listeria monocytogenes GN=iolC PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.005e-23
Identity = 64/238 (26.89%), Postives = 122/238 (51.26%), Query Frame = 1 
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS-LWHPNLKLLLVTLGEHGCRYYTKS 807
            +++ G   ID         + E   F K  GG+PAN+AI  A+LG K  F+GK+ DD+ G  +   +++  ++ DG+  D +G +  LAF  +++  E   + YR   AD+ L P+E++ + I+ A+V      +L   P R A L+A+  A++   +++++ + R   W + EE       + ++A+VI  +  E + +       +E+  + L+    K++++  G  G   YTK+
Sbjct:   13 LITVGRACIDLNAVEYNRPMEETMTFSKYVGGSPANIAIGTAKLGLKVGFIGKISDDQHGRFIEKYMRDLAINTDGMVKDTEGRKVGLAFTEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKAVSLARKNDVVVAFELDYRPYTWKNSEETAVYYSLVAEQADVIIGTRDEFDMMENQVGGKNEATKAYLFQHQAKIVVIKHGVEGSFAYTKA 250
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_BACC3 (5-dehydro-2-deoxygluconokinase OS=Bacillus cereus (strain 03BB102) GN=iolC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.338e-22
Identity = 67/240 (27.92%), Postives = 121/240 (50.42%), Query Frame = 1 
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHPN-LKLLLVTLGEHGCRYYTK 804
            +++ G + +D     +   + E   F K  GG+PAN+AI  +RLG +  F+GK+ DD+ G  + G LK+N ++ D I+ D  GA T LAF  +++  +   + YR+  AD+ L P E++ + I+ +K       +L   P R A   A++ A +   ++ +D + R   W S  E         +K++VI  +  E   +E L   ++ +D+     W  +  K++++  G  G   YT+
Sbjct:   14 LIAVGRLCVDLNANETQRPMEETKTFTKYVGGSPANIAIGASRLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIHIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYAHKHDVVVFFDVDYRPYTWQSEAETAVYYNLAAEKSDVIIGTREEFDMMEKLLNYEQSNDQVTAERWFSHYAKIVVIKHGGDGSIAYTR 253
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_BACAH (5-dehydro-2-deoxygluconokinase OS=Bacillus thuringiensis (strain Al Hakam) GN=iolC PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.338e-22
Identity = 67/240 (27.92%), Postives = 121/240 (50.42%), Query Frame = 1 
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHPN-LKLLLVTLGEHGCRYYTK 804
            +++ G + +D     +   + E   F K  GG+PAN+AI  +RLG +  F+GK+ DD+ G  + G LK+N ++ D I+ D  GA T LAF  +++  +   + YR+  AD+ L P E++ + I+ +K       +L   P R A   A++ A +   ++ +D + R   W S  E         +K++VI  +  E   +E L   ++ +D+     W  +  K++++  G  G   YT+
Sbjct:   14 LIAVGRLCVDLNANETQRPMEETKTFTKYVGGSPANIAIGASRLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIHIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYAHKHDVVVFFDVDYRPYTWQSEAETAVYYNLAAEKSDVIIGTREEFDMMEKLLNYEQSNDQVTAERWFSHYAKIVVIKHGGDGSIAYTR 253
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_PHOPR (5-dehydro-2-deoxygluconokinase OS=Photobacterium profundum GN=iolC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 65/239 (27.20%), Postives = 123/239 (51.46%), Query Frame = 1 
Query:  103 VSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEF----LTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTK 804
            +  G   +D     +   +A+  GF K  GG+ AN+A+A+++LGGK  F+G + DD FG  + G + E G++ DG+  D  G+RT++AF  ++ + +   + YRN ++D+ L+P++++   I  +K+      +L   P R A L AM+ A+ +  ++  D + R   W +  +A          ++++  +  E +     L   +  DD +A      N ++++V  GE G + Y K
Sbjct:   15 IVLGRAGVDLYAREANTDMADISGFNKFVGGSAANIAVAISKLGGKVGFIGCVADDAFGGYVRGYMTEQGINLDGMMTDNSGSRTSVAFTEMKPN-DCTVLIYRNKASDLTLKPEQVDPAYIAQSKMLVVTGTALSESPSREATLIAMEHARRSNTVVVLDVDYRPYSWRTDVDASIYYGIAAGLSDIVIGNREEFDMMETVLAPGNTDDDATADRFLRANTQVVIVKAGELGSKVYCK 252
[Close]
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_LISIN (5-dehydro-2-deoxygluconokinase OS=Listeria innocua GN=iolC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.639e-22
Identity = 62/238 (26.05%), Postives = 121/238 (50.84%), Query Frame = 1 
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL-SLWHPNLKLLLVTLGEHGCRYYTKS 807
            +++ G   ID         + E   F K  GG+PAN+AI  A+LG K  F+GK+ DD+ G  +   +++  ++ DG+  D  G +  LAF  +++  E   + YR   AD+ L P+E++ + I+  +V      +L   P R A L+A+  A++   +++++ + R   W + EE       + ++A+VI  +  E + +      ++E  + +L+    +++++  G  G   YTK+
Sbjct:   13 LITVGRACIDLNAVEYNRPMEETMTFSKYVGGSPANIAIGTAKLGLKVGFIGKISDDQHGRFIEKYMRDLNINTDGMVKDTAGRKVGLAFTEIKSPEECSILMYRENVADLYLTPEEISEDYIKETRVLLVSGTALAQSPSREAVLKAVHLAQKNDVIVAFELDYRPYTWKNTEETAVYYSLVAEQADVIIGTRDEFDMMENQIGGNNEMTIDNLFKHKAEIIVIKHGVEGSFAYTKA 250
The following BLAST results are available for this feature:
BLAST of FC891027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IOLC_BACHK2.695e-2328.755-dehydro-2-deoxygluconokinase OS=Bacillus thuring... [more]
IOLC_BACAN2.695e-2328.755-dehydro-2-deoxygluconokinase OS=Bacillus anthrac... [more]
IOLC_BACAC2.695e-2328.755-dehydro-2-deoxygluconokinase OS=Bacillus anthrac... [more]
IOLC_BACAA2.695e-2328.755-dehydro-2-deoxygluconokinase OS=Bacillus anthrac... [more]
IOLC1_BACCZ4.598e-2328.335-dehydro-2-deoxygluconokinase 1 OS=Bacillus cereu... [more]
IOLC_LISMO6.005e-2326.895-dehydro-2-deoxygluconokinase OS=Listeria monocyt... [more]
IOLC_BACC31.338e-2227.925-dehydro-2-deoxygluconokinase OS=Bacillus cereus ... [more]
IOLC_BACAH1.338e-2227.925-dehydro-2-deoxygluconokinase OS=Bacillus thuring... [more]
IOLC_PHOPR1.747e-2227.205-dehydro-2-deoxygluconokinase OS=Photobacterium p... [more]
IOLC_LISIN6.639e-2226.055-dehydro-2-deoxygluconokinase OS=Listeria innocua... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA87DB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891027 ID=FC891027; Name=FC891027; organism=Citrus clementina; type=EST; length=856bp
ATTATTTCTCTTCATAAACTCTCTCTCTATTCAATACACAACGTTTCGAT
TTTTGTACAAATGGCTACAAACGGCGCCGTTTCATCCTCCTCAAGCCTGA
TCGTGTCCTTCGGCGAGATGCTCATAGACTTCGTCCCGACGGTCTCCGGC
GTCTCCCTCGCCGAGGCCCCTGGATTCCTCAAGGCCCCCGGCGGCGCCCC
CGCCAACGTCGCCATAGCTGTAGCTCGCCTCGGAGGCAAGGCAGCCTTCG
TCGGCAAGCTCGGCGACGACGAGTTCGGTCACATGCTCGCTGGGATCTTG
AAGGAGAACGGAGTCAGCGCTGACGGCATCAACTTTGACCAGGGTGCCAG
AACTGCCCTTGCATTCGTGACCCTGCGGGCTGACGGCGAGCGCGAGTTCA
TGTTTTACAGAAACCCCAGCGCTGATATGCTCTTGAGACCCGACGAGCTT
AATCTTGAGCTGATCAGATCTGCCAAAGTTTTCCACTATGGATCAATAAG
CCTGATAGTGGAGCCATGCCGATCAGCTCACTTAGAGGCAATGAAAGCAG
CCAAGGAAGCAGGAGCCCTGCTCTCATACGACCCCAACCTCCGGCTACCG
TTGTGGCCCTCGCCGGAGGAGGCGCGTGAGCAGATAATGAGCATCTGGGA
CAAGGCAGAGGTAATCAAAGTCAGTGATGTGGAGCTTGAATTCCTCACCG
GGAGTGACAAGATTGATGATGAATCAGCATTGTCGCTCTGGCACCCCAAC
TTGAAACTCCTTTTGGTCACCCTTGGTGAGCATGGCTGTAGATACTACAC
TAAGAGTTTCAAAGGAGCAGTGGATGCTTTTCATGTGAACACAGTAGATA
CAACCG
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