FC891027

Overview
NameFC891027
Unique NameFC891027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC891027_ssr19 microsatellite FC891027_ssr19:19..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6843 contig Ccv1_Contig6843:8..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_BACA2 (5-dehydro-2-deoxygluconokinase OS=Bacillus amyloliquefaciens (strain FZB42) GN=iolC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.639e-22
Identity = 68/238 (28.57%), Postives = 117/238 (49.16%), Query Frame = 1
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG-SDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKS 807
            IV+ G   ID         + E   F K  GG+PAN+AI  A+LG KA F+GK+ DD+ G  +   ++  GV    +  D +G +  LAF  + +  E   + YR+  AD+ L P E+N   I +AK+      +L   P R A L+A+  AK+    + ++ + R   W S EE       + ++++++  +  E + +   S   +DE+   L+  +  L+++  G  G   Y++S
Sbjct:   13 IVAIGRACIDLNAAEYNRPMEETMTFSKYVGGSPANIAIGSAKLGLKAGFIGKIPDDQHGRFIVSYMQGKGVDTSQMTVDREGRKAGLAFTEILSPEECSILMYRDDVADLYLEPSEVNEGYIANAKMLLVSGTALAKSPSREAVLKAVHIAKKHDVKVVFELDYRPYTWQSAEETAVYYTLVAEQSDIVIGTRDEFDVMENRSGGGNDETVRHLFAHSADLVVIKHGVDGSYAYSRS 250          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_BACSU (5-dehydro-2-deoxygluconokinase OS=Bacillus subtilis GN=iolC PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.671e-22
Identity = 69/240 (28.75%), Postives = 121/240 (50.42%), Query Frame = 1
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQ-GARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFL---TGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKS 807
            IV+ G   ID         + E   F K  GG+PAN+AI  A+LG KA F+GK+ DD+ G  +   +++ GV    +  DQ G +  LAF  + +  E   + YR+  AD+ L P E++ + I +AK+      +L   P R A L+A++ AK+    + ++ + R   W S +E       + ++++++  +  E + +   TG    ++ES   L+  +  L+++  G  G   Y+KS
Sbjct:   13 IVAIGRACIDLNAVEYNRPMEETMTFSKYVGGSPANIAIGSAKLGLKAGFIGKIPDDQHGRFIESYMRKTGVDTTQMIVDQDGHKAGLAFTEILSPEECSILMYRDDVADLYLEPSEVSEDYIANAKMLLVSGTALAKSPSREAVLKAVQYAKKHQVKVVFELDYRPYTWQSSDETAVYYSLVAEQSDIVIGTRDEFDVMENRTGGS--NEESVNHLFGHSADLVVIKHGVEGSYAYSKS 250          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_LISMH (5-dehydro-2-deoxygluconokinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=iolC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 62/238 (26.05%), Postives = 120/238 (50.42%), Query Frame = 1
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS-LWHPNLKLLLVTLGEHGCRYYTKS 807
            +++ G   ID         + E   F K  GG+PAN+AI  A+LG K  F+GK+  D+ G  +   +++  ++ DG+  D +G +  LAF  +++  E   + YR   AD+ L P+E++ + I+ A+V      +L   P R A L+A+  A++    ++++ + R   W + EE       + ++A+VI  +  E + +       +E+  + L+    +++++  G  G   YTK+
Sbjct:   13 LITVGRACIDLNAVEYNRPMEETMTFSKYVGGSPANIAIGTAKLGLKVGFIGKISADQHGRFIEKYMRDLSINTDGMVKDTEGRKVGLAFTEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKAVSLARKNDVAIAFELDYRPYTWTNTEETAVYYSLVAEQADVIIGTRDEFDMMENQVGGKNEATKAHLFQHQAEIVVIKHGVEGSFAYTKA 250          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_LISMF (5-dehydro-2-deoxygluconokinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=iolC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.523e-21
Identity = 62/238 (26.05%), Postives = 120/238 (50.42%), Query Frame = 1
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS-LWHPNLKLLLVTLGEHGCRYYTKS 807
            +++ G   ID         + E   F K  GG+PAN+AI  A+LG K  F+GK+  D+ G  +   +++  ++ DG+  D +G +  LAF  +++  E   + YR   AD+ L P+E++ + I+ A+V      +L   P R A L+A+  A++    ++++ + R   W + EE       + ++A+VI  +  E + +       +E+  + L+    +++++  G  G   YTK+
Sbjct:   13 LITVGRACIDLNAVEYNRPMEETMTFSKYVGGSPANIAIGTAKLGLKVGFIGKISADQHGRFIEKYMRDLSINTDGMVKDTEGRKVGLAFTEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKAVSLARKNDVAVAFELDYRPYTWTNTEETAVYYSLVAEQADVIIGTRDEFDMMENQVGGKNEATKAHLFQHQAEIVVIKHGVEGSFAYTKA 250          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_LISMC (5-dehydro-2-deoxygluconokinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=iolC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.523e-21
Identity = 62/238 (26.05%), Postives = 120/238 (50.42%), Query Frame = 1
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFD-QGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS-LWHPNLKLLLVTLGEHGCRYYTKS 807
            +++ G   ID         + E   F K  GG+PAN+AI  A+LG K  F+GK+  D+ G  +   +++  ++ DG+  D +G +  LAF  +++  E   + YR   AD+ L P+E++ + I+ A+V      +L   P R A L+A+  A++    ++++ + R   W + EE       + ++A+VI  +  E + +       +E+  + L+    +++++  G  G   YTK+
Sbjct:   13 LITVGRACIDLNAVEYNRPMEETMTFSKYVGGSPANIAIGTAKLGLKVGFIGKISADQHGRFIEKYMRDLSINTDGMVKDTEGRKVGLAFTEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKAVSLARKNDVAVAFELDYRPYTWTNTEETAVYYSLVAEQADVIIGTRDEFDMMENQVGGKNEATKAHLFQHQAEIVVIKHGVEGSFAYTKA 250          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_BACLD (5-dehydro-2-deoxygluconokinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=iolC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 65/238 (27.31%), Postives = 117/238 (49.16%), Query Frame = 1
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQ-GARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTG-SDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKS 807
            IV+ G   ID         + +   F K  GG+PAN+AI  ++LG K  F+GK+ DD+ G  +   ++  GV    +  D+ G +  LAF  + +  E   + YR+  AD+ L P E+N + I  +K+      +L   P R A L+A++ AK+    + ++ + R   W S EE       + ++++++  +  E + +   S   ++ES   L+  +  L+++  G  G   Y+KS
Sbjct:   13 IVAIGRACIDLNAVEYNRPMEQTMTFSKYVGGSPANIAIGSSKLGLKTGFIGKIPDDQHGRFIETYMRNTGVDTSQMAVDKDGHKAGLAFTEILSPEECSILMYRDDVADLYLAPSEVNEDYIAKSKMLLVSGTALAKSPSREAVLKAVQLAKKHQVKVVFELDYRPYTWTSAEETAVYYTLVAEQSDIVIGTRDEFDVMENKSGGSNEESVQHLFAHSADLVVIKHGVEGSYAYSKS 250          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC2_BACCZ (5-dehydro-2-deoxygluconokinase 2 OS=Bacillus cereus (strain ZK / E33L) GN=iolC2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 64/240 (26.67%), Postives = 119/240 (49.58%), Query Frame = 1
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQ-GARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHP-NLKLLLVTLGEHGCRYYTK 804
            +++ G + +D     +   +     F K  GG+PAN+AI   RLG +  F+GK+ DD+ G  +   L++N ++ D I  D+ GA T LAF  +++  +   + YR+  AD+ L P E++ + I+ +K       +L   P R A   A++ A++   ++ +D + R   W S  E         +K++VI  +  E   +E L   ++ +D+     W   + K++++  G  G   YT+
Sbjct:   14 LIAVGRLCVDLNANETQRPMEATRTFTKYVGGSPANIAIGATRLGLQTGFIGKVSDDQMGRFITRYLQDNNINTDQICIDRTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSEAETAVYYNLAAEKSDVIIGTREEFDMMEKLLNYEESNDQVTAERWFSHHAKIVVIKHGGDGSIAYTR 253          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_CLOTE (5-dehydro-2-deoxygluconokinase OS=Clostridium tetani GN=iolC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.643e-20
Identity = 68/239 (28.45%), Postives = 111/239 (46.44%), Query Frame = 1
Query:  100 IVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGIN-FDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLW--HPNLKLLLVTLGEHGCRYY 798
            ++  G + IDF P      L E+  F K  GG+P N+A+ +ARLG K  F+  + DD+FG+ +   LK  G+    IN    G +  L F  + +  E   + YR   AD+ L   E++ + I+SAK       +L   P R A   A++ AK+    + +D + R   W   EE           ++VI  S  E   +E L   ++ +D+     W  + N K++++  G+ G   Y
Sbjct:   14 VIPIGRVTIDFNPNEINRPLEESRTFTKYLGGSPGNIAVGLARLGKKVGFLSTVSDDQFGNFVVNYLKNEGIDISQINRAKNGEKLGLTFTEILSPKESSILMYRKGIADLQLSSKEVSEDYIKSAKAIVISGTALSKSPSREAAFVALEYAKKHNTRIIFDLDYREYTWNCKEEIAIYYSLAARMSDVIMGSREEFNLMEGLISPEESNDKETAERWIGYGN-KIVVIKHGKDGSTAY 251          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: SCRK_RHILT (Fructokinase OS=Rhizobium leguminosarum bv. trifolii GN=frk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.758e-20
Identity = 80/252 (31.75%), Postives = 120/252 (47.62%), Query Frame = 1
Query:   97 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFHVNTVDT 852
            +I+  GE LID +P     +L E  GF    GGA  N AIA+ RLG   AF   + DD  G +L   LK + V            T +AFV L  +G+  + FY   +A  ++   +L  +L    +  H+G+ISLI  PC   + EA+   + A  ++S DPN+R            +I  +  K++++K SD +L++  G     D  A    +   KL+++T G  G   YTK  K  V +  V  VDT
Sbjct:    1 MILCCGEALIDMLPR--DTTLGEK-GFAPYAGGAIFNTAIALGRLGIPTAFFTGIADDMMGEILLETLKASNVDYSPCAITPRPST-IAFVKL-VNGQATYAFYDEGTAGRMITTADLP-DLGDDCEALHFGAISLIPSPCGETY-EALLDREAASRVISLDPNIRPGFIKDKPSHMARIKRMAAKSDIVKFSDEDLDWF-GLQGDHDALAAHWLNHGAKLVVITKGAEGASGYTKDRKVTVPSERVTVVDT 244          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_MYCHJ (5-dehydro-2-deoxygluconokinase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=iolC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.870e-19
Identity = 60/242 (24.79%), Postives = 112/242 (46.28%), Query Frame = 1
Query:  103 VSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEF-----LTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFK 813
            +  G + IDF PT    +L  +  F K  GG+ AN+AI ++RL  K  F G + DD+FG+ +  + +   +    I   +  +  L F  + ++ +   + YR+  AD+ +   +++L+ I   K+      SL   P R A L+A+  AK  G  + +D + R   W + +E       +   +++I  S  E++      L   + + D+     W   + L+++  G+ G + Y K  K
Sbjct:    8 ILIGRITIDFNPTDYYNNLENSSLFKKYIGGSAANIAIGLSRLKNKVGFFGSVSDDQFGNFVLNVFENEKIDISRIKKTKDHKLGLTFTEMLSEEKSTILMYRDNVADLQIDVSDIDLDYILRTKILVISGTSLAKSPSREAVLKALFLAKNNGIKVVFDIDYRPYSWKNLDEVSLYYQIVAQNSDLIIGSYEEIQLTSRFCLENPENLIDDDYAKYWLKFVDLIIIKNGKKGSKLYQKDKK 249          
The following BLAST results are available for this feature:
BLAST of FC891027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IOLC_BACA26.639e-2228.575-dehydro-2-deoxygluconokinase OS=Bacillus amyloli... [more]
IOLC_BACSU8.671e-2228.755-dehydro-2-deoxygluconokinase OS=Bacillus subtili... [more]
IOLC_LISMH1.932e-2126.055-dehydro-2-deoxygluconokinase OS=Listeria monocyt... [more]
IOLC_LISMF2.523e-2126.055-dehydro-2-deoxygluconokinase OS=Listeria monocyt... [more]
IOLC_LISMC2.523e-2126.055-dehydro-2-deoxygluconokinase OS=Listeria monocyt... [more]
IOLC_BACLD7.340e-2127.315-dehydro-2-deoxygluconokinase OS=Bacillus licheni... [more]
IOLC2_BACCZ1.252e-2026.675-dehydro-2-deoxygluconokinase 2 OS=Bacillus cereu... [more]
IOLC_CLOTE3.643e-2028.455-dehydro-2-deoxygluconokinase OS=Clostridium teta... [more]
SCRK_RHILT4.758e-2031.75Fructokinase OS=Rhizobium leguminosarum bv. trifol... [more]
IOLC_MYCHJ6.870e-1924.795-dehydro-2-deoxygluconokinase OS=Mycoplasma hyopn... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA87DB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891027 ID=FC891027; Name=FC891027; organism=Citrus clementina; type=EST; length=856bp
ATTATTTCTCTTCATAAACTCTCTCTCTATTCAATACACAACGTTTCGAT
TTTTGTACAAATGGCTACAAACGGCGCCGTTTCATCCTCCTCAAGCCTGA
TCGTGTCCTTCGGCGAGATGCTCATAGACTTCGTCCCGACGGTCTCCGGC
GTCTCCCTCGCCGAGGCCCCTGGATTCCTCAAGGCCCCCGGCGGCGCCCC
CGCCAACGTCGCCATAGCTGTAGCTCGCCTCGGAGGCAAGGCAGCCTTCG
TCGGCAAGCTCGGCGACGACGAGTTCGGTCACATGCTCGCTGGGATCTTG
AAGGAGAACGGAGTCAGCGCTGACGGCATCAACTTTGACCAGGGTGCCAG
AACTGCCCTTGCATTCGTGACCCTGCGGGCTGACGGCGAGCGCGAGTTCA
TGTTTTACAGAAACCCCAGCGCTGATATGCTCTTGAGACCCGACGAGCTT
AATCTTGAGCTGATCAGATCTGCCAAAGTTTTCCACTATGGATCAATAAG
CCTGATAGTGGAGCCATGCCGATCAGCTCACTTAGAGGCAATGAAAGCAG
CCAAGGAAGCAGGAGCCCTGCTCTCATACGACCCCAACCTCCGGCTACCG
TTGTGGCCCTCGCCGGAGGAGGCGCGTGAGCAGATAATGAGCATCTGGGA
CAAGGCAGAGGTAATCAAAGTCAGTGATGTGGAGCTTGAATTCCTCACCG
GGAGTGACAAGATTGATGATGAATCAGCATTGTCGCTCTGGCACCCCAAC
TTGAAACTCCTTTTGGTCACCCTTGGTGAGCATGGCTGTAGATACTACAC
TAAGAGTTTCAAAGGAGCAGTGGATGCTTTTCATGTGAACACAGTAGATA
CAACCG
back to top