FC891027

Overview
NameFC891027
Unique NameFC891027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC891027_ssr19 microsatellite FC891027_ssr19:19..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6843 contig Ccv1_Contig6843:8..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_MYCH7 (5-dehydro-2-deoxygluconokinase OS=Mycoplasma hyopneumoniae (strain 7448) GN=iolC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.870e-19
Identity = 60/242 (24.79%), Postives = 112/242 (46.28%), Query Frame = 1
Query:  103 VSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEF-----LTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFK 813
            +  G + IDF PT    +L  +  F K  GG+ AN+AI ++RL  K  F G + DD+FG+ +  + +   +    I   +  +  L F  + ++ +   + YR+  AD+ +   +++L+ I   K+      SL   P R A L+A+  AK  G  + +D + R   W + +E       +   +++I  S  E++      L   + + D+     W   + L+++  G+ G + Y K  K
Sbjct:    8 ILIGRITIDFNPTDYYNNLENSSLFKKYIGGSAANIAIGLSRLKNKVGFFGSVSDDQFGNFVLNVFENEKIDISHIKKTKDHKLGLTFTEMLSEEKSTILMYRDNVADLQIDVSDIDLDYILRTKILVISGTSLAKSPSREAVLKALFLAKNNGIKVVFDIDYRPYSWKNLDEVSLYYQIVAQNSDLIIGSYEEIQLTSRFCLENPENLIDDDYAKYWLKFVDLIIIKNGKKGSKLYQKDKK 249          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: IOLC_MYCH2 (5-dehydro-2-deoxygluconokinase OS=Mycoplasma hyopneumoniae (strain 232) GN=iolC PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.611e-18
Identity = 59/242 (24.38%), Postives = 112/242 (46.28%), Query Frame = 1
Query:  103 VSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEF-----LTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFK 813
            +  G + IDF P     +L  +  F K  GG+ AN+AI ++RL  K  F G + DD+FG+ +  + ++  +    I   +  +  L F  + ++ +   + YR+  AD+ +   +++L+ I   K+      SL   P R A L+A+  AK  G  + +D + R   W + +E       +   +++I  S  E++      L   + + D+     W   + L+++  G+ G + Y K  K
Sbjct:    8 ILIGRITIDFNPMDYYNNLENSSLFKKYIGGSAANIAIGLSRLKNKVGFFGSVSDDQFGNFVLNVFEKEKIDISHIKKTKDHKLGLTFTEMLSEEKSTILMYRDNVADLQIDVSDIDLDYILRTKILVISGTSLAKSPSREAVLKALFLAKNNGIKVVFDIDYRPYSWKNLDEVSLYYQIVAQNSDLIIGSYEEIQLTSRFCLENPENLIDDDYAKYWLKFVDLIIIKNGKKGSKLYQKDKK 249          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: KDGK_BACSU (2-dehydro-3-deoxygluconokinase OS=Bacillus subtilis GN=kdgK PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 71/257 (27.63%), Postives = 110/257 (42.80%), Query Frame = 1
Query:  103 VSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGAR-TALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLE-----AMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFHVNTVDTT 855
            V+FGE +  F     G  L E   F K   GA +NVA  +ARLG +  ++ K+G+D+ G  +   LK+ GV    +   Q    T L   +   +G+ +  +YR  SA   L   E   +  + A   H   I     P  SA ++      M   + AG  +S+DPN+R  LWP        I  +   A+       E E LTG +K  +  A          + + LG+ G  + T + +G ++   V+ V  T
Sbjct:    6 VTFGESMAMFYANEYG-GLHEVSTFSKGLAGAESNVACGLARLGFRMGWMSKVGNDQLGTFILQELKKEGVDVSRVIRSQDENPTGLLLKSKVKEGDPQVTYYRKNSAASTLTTAEYPRDYFQCAGHLHVTGI----PPALSAEMKDFTYHVMNDMRNAGKTISFDPNVRPSLWPDQATMVHTINDLAGLADWFFPGIAEGELLTG-EKTPEGIADYYLKKGASFVAIKLGKEGAYFKTGTSEGFLEGCRVDRVVDT 256          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: RBSK_HAEIN (Ribokinase OS=Haemophilus influenzae GN=rbsK PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 57/229 (24.89%), Postives = 100/229 (43.67%), Query Frame = 1
Query:  184 APGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEE-AREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESAL---SLWH-PNLKLLLVTLGEHGCRYYTKSFKGAVDAFHVNTVDTT 855
            A GG  AN A+A ARLG K AF+  +G D  G  +     + G+    IN      T +AF+ +    E   +     ++ +             S  V       +    C    LE   +  E  A ++    +++ L P+P +   ++++S+ D   +I  ++ E E LTG +  D++SA+   S++H   ++ +++TLG  G     K     +  F V  +DTT
Sbjct:   37 AYGGKGANQAVAAARLGAKVAFISCIGSDSIGKTMKNAFAQEGIDTTHINTVSQEMTGMAFIQVAKSSENSIVLASGANSHL-------------SEMVVRQSEAQIAQSDCLLMQLETPLSGVELAAQIAKKNGVKVVLNPAPAQILSDELLSLID---IITPNETEAEILTGVEVADEQSAVKAASVFHDKGIETVMITLGAKGVFVSRKGKSRIIKGFCVQAIDTT 249          
BLAST of FC891027 vs. ExPASy Swiss-Prot
Match: SCRK_SALTH (Fructokinase (Fragment) OS=Salmonella thompson GN=scrK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 54/163 (33.13%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  367 VTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFKGAVDAFHVNTVDTT 855
            V L   GER F F   PSAD+ L  ++L      + +  H  SI+L  EP RS    AM++ + AG  +S+DPN+R  LW         +      A V+K+S+ EL F++ S+ +    A        +LLLVT G+ G     +      +A  V +VDTT
Sbjct:    1 VDLDDQGERTFTFMVRPSADLFLVEEDL--PQFAAGQWLHVCSIALSAEPSRSTTFAAMESIRSAGGRVSFDPNIRPDLWQDQALLLACLDRALHMANVVKLSEEELVFISSSNDLAYGIASVTERYQPELLLVTRGKAGVLAAFQQKFTHFNARPVASVDTT 161          
The following BLAST results are available for this feature:
BLAST of FC891027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IOLC_MYCH76.870e-1924.795-dehydro-2-deoxygluconokinase OS=Mycoplasma hyopn... [more]
IOLC_MYCH22.611e-1824.385-dehydro-2-deoxygluconokinase OS=Mycoplasma hyopn... [more]
KDGK_BACSU6.019e-1527.632-dehydro-3-deoxygluconokinase OS=Bacillus subtili... [more]
RBSK_HAEIN1.482e-1324.89Ribokinase OS=Haemophilus influenzae GN=rbsK PE=3 ... [more]
SCRK_SALTH6.228e-1233.13Fructokinase (Fragment) OS=Salmonella thompson GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA87DB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891027 ID=FC891027; Name=FC891027; organism=Citrus clementina; type=EST; length=856bp
ATTATTTCTCTTCATAAACTCTCTCTCTATTCAATACACAACGTTTCGAT
TTTTGTACAAATGGCTACAAACGGCGCCGTTTCATCCTCCTCAAGCCTGA
TCGTGTCCTTCGGCGAGATGCTCATAGACTTCGTCCCGACGGTCTCCGGC
GTCTCCCTCGCCGAGGCCCCTGGATTCCTCAAGGCCCCCGGCGGCGCCCC
CGCCAACGTCGCCATAGCTGTAGCTCGCCTCGGAGGCAAGGCAGCCTTCG
TCGGCAAGCTCGGCGACGACGAGTTCGGTCACATGCTCGCTGGGATCTTG
AAGGAGAACGGAGTCAGCGCTGACGGCATCAACTTTGACCAGGGTGCCAG
AACTGCCCTTGCATTCGTGACCCTGCGGGCTGACGGCGAGCGCGAGTTCA
TGTTTTACAGAAACCCCAGCGCTGATATGCTCTTGAGACCCGACGAGCTT
AATCTTGAGCTGATCAGATCTGCCAAAGTTTTCCACTATGGATCAATAAG
CCTGATAGTGGAGCCATGCCGATCAGCTCACTTAGAGGCAATGAAAGCAG
CCAAGGAAGCAGGAGCCCTGCTCTCATACGACCCCAACCTCCGGCTACCG
TTGTGGCCCTCGCCGGAGGAGGCGCGTGAGCAGATAATGAGCATCTGGGA
CAAGGCAGAGGTAATCAAAGTCAGTGATGTGGAGCTTGAATTCCTCACCG
GGAGTGACAAGATTGATGATGAATCAGCATTGTCGCTCTGGCACCCCAAC
TTGAAACTCCTTTTGGTCACCCTTGGTGAGCATGGCTGTAGATACTACAC
TAAGAGTTTCAAAGGAGCAGTGGATGCTTTTCATGTGAACACAGTAGATA
CAACCG
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