FC891029

Overview
NameFC891029
Unique NameFC891029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14023 contig Ccv1_Contig14023:69..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A16_ARATH (1-aminocyclopropane-1-carboxylate synthase 6 OS=Arabidopsis thaliana GN=ACS6 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.655e-26
Identity = 57/135 (42.22%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  433 DDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            ++S Y+ G   + ++P+  I+ P+G+IQ+GLAEN  C DL+ KWV ++   SI   +G +   S I  +Q + G+ E + A+A FM +     V FDP +IV++ GAT A E + FCLA+ G+  LVP+PYYPGF
Sbjct:   26 ENSSYFDGWKAYEENPFHPIDRPDGVIQMGLAENQLCGDLMRKWVLKHPEASICTSEGVN-QFSDIAIFQDYHGLPEFRQAVAKFMEKTRNNKVKFDPDRIVMSGGATGAHETVAFCLANPGDGFLVPTPYYPGF 159          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A111_ARATH (1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana GN=ACS11 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.655e-26
Identity = 59/147 (40.14%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  400 ISARGISIAKPDDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSI-SGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            +S++ +  +   DS Y++G  ++  +P+ +  N +GI+Q+GLAEN    DLIEKW+ E+    ++G   +D S+   +  +Q + G+   K AMA FM ++    V FD +++VLTAG+T A E L FCLA+ G+A L+P+PYYPGF
Sbjct:    2 LSSKVVGDSHGQDSSYFLGWQEYEKNPFHESFNTSGIVQMGLAENQLSFDLIEKWLEEH--PEVLGLKKNDESVFRQLALFQDYHGLPAFKDAMAKFMGKIRENKVKFDTNKMVLTAGSTSANETLMFCLANPGDAFLIPAPYYPGF 146          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A12_CUCPE (1-aminocyclopropane-1-carboxylate synthase 2 OS=Cucurbita pepo GN=ACS2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.066e-24
Identity = 58/135 (42.96%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  433 DDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            ++S Y+ G   + ++P+   NNP G+IQ+GLAEN     +I  W+ ++   SI   +G +     I  +Q + G+ E + AMA FM +V G  V FDPS+IV+  GAT A E + FCLAD G+A LVPSPYY  F
Sbjct:   25 ENSAYFDGWKAYDNNPFHPENNPLGVIQMGLAENQLSFGMIVDWIRKHPEASICTPEGLE-KFKSIANFQDYHGLQEFRKAMASFMGKVRGGRVKFDPSRIVMGGGATGASETVIFCLADPGDAFLVPSPYYAAF 158          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A11_CUCMA (1-aminocyclopropane-1-carboxylate synthase CMW33 OS=Cucurbita maxima GN=ACS1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.066e-24
Identity = 58/135 (42.96%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  433 DDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            ++SPY+ G   + +DP+   +NP G+IQ+GLAEN    D+I  W+ ++   SI    G +     I  +Q + G+ E +  +A FM +V G  V FDPS+IV+  GAT A E + FCLAD G+A LVPSPYY  F
Sbjct:   25 ENSPYFDGWKAYDNDPFHPEDNPLGVIQMGLAENQLSFDMIVDWIRKHPEASICTPKGLE-RFKSIANFQDYHGLPEFRNGIASFMGKVRGGRVQFDPSRIVMGGGATGASETVIFCLADPGDAFLVPSPYYAAF 158          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A1C_DIACA (1-aminocyclopropane-1-carboxylate synthase OS=Dianthus caryophyllus GN=ACS2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.627e-23
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  445 YYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            Y+ G   +  DPY    N NG+IQ+GLAEN  C DL+ +W+ +N   SI   +G +     I  +Q + G+ E + A+A FM +   + V F+P +IV++ GA+ A E L FCLA+ G+A L+PSPYYP F
Sbjct:   28 YFDGWKAYDRDPYHSTKNSNGVIQMGLAENQLCFDLVTEWLLKNPQASICTNEGVN-KFMDIAIFQDYHGLPEFRSAVAKFMGKARDEKVIFNPDRIVMSGGAS-ASETLLFCLANPGDAFLIPSPYYPAF 156          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A1C_PHAAU (1-aminocyclopropane-1-carboxylate synthase (Fragment) OS=Phaseolus aureus GN=ACS5 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.550e-20
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  514 QLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            Q+GLAEN    DL+E W+  N   SI   +G +     I  +Q + G+ E + A+A FM++  G  ++FDP +IV++ GAT A E+  FCLAD G A LVP PYYPGF
Sbjct:    1 QMGLAENQLTSDLVEDWILNNPEASICTPEGIN-DFRAIANFQDYHGLAEFRNAVAKFMARTRGNRITFDPDRIVMSGGATGAHEVTAFCLADPGEAFLVPIPYYPGF 107          
The following BLAST results are available for this feature:
BLAST of FC891029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
1A16_ARATH5.655e-2642.221-aminocyclopropane-1-carboxylate synthase 6 OS=Ar... [more]
1A111_ARATH5.655e-2640.141-aminocyclopropane-1-carboxylate synthase 11 OS=A... [more]
1A12_CUCPE1.066e-2442.961-aminocyclopropane-1-carboxylate synthase 2 OS=Cu... [more]
1A11_CUCMA1.066e-2442.961-aminocyclopropane-1-carboxylate synthase CMW33 O... [more]
1A1C_DIACA2.627e-2341.981-aminocyclopropane-1-carboxylate synthase OS=Dian... [more]
1A1C_PHAAU3.550e-2045.371-aminocyclopropane-1-carboxylate synthase (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA75BF03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA75BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891029 ID=FC891029; Name=FC891029; organism=Citrus clementina; type=EST; length=837bp
AAAAATCTGAATCGCCAACAGCCACCCTATCTCATTCATGTCATTCTTCT
CTCTACACGGAGGGCGGATCACCCGAGGTGCGTCAAGTTCAATCGGGCCG
GACCAACCCAACACATGACCCAATCCCATCGGACCACGGAACCCGAGCAC
CGCAAGCCGACCACTGCCACAGCCATGAGACTGATAGTGCCCTTACAAGG
CGTAGTCCAAGGCAGGGGCGGCCTTATCTTGGGCTCTCTAATCCCCTGCG
CGCTCTTCTACTTCCTCCAGTTTTACTTGAAACGCCACCGTTCTCCAAAC
CCTCCCTCCCCCTCCACCTCATCCTCCAACCTCGCTGGACTCCCTAGAAC
TTCCTCGCGGTCTACTTTGTCGTCGCGTGGATCGCTCGGTCCGGTTCGGA
TATCGGCCCGGGGGATCTCGATTGCGAAGCCGGACGATTCTCCGTATTAT
ATCGGGTTGAACAAGTTTCGGGACGATCCCTATGATAAAATCAATAATCC
GAATGGGATTATTCAGCTTGGATTGGCCGAGAACACATCGTGTTTGGATT
TGATTGAGAAATGGGTGTCGGAGAACTTGAGTGATTCTATAATGGGACGG
GACGGTGATGATTTGAGTATCAGTGGGATTACGACCTACCAGCCGTTTGA
TGGAATGATGGAGCTTAAAGTGGCTATGGCGGGTTTCATGTCTCAGGTCT
TGGGGCAAGCTGTCTCATTTGACCCCTCTCAGATAGTATTAACTGCTGGT
GCAACTCCTGCGGTTGAGATACTATGCTTCTGCTTGGCAGATCATGGGAA
CGCATTGCTTGTTCCCTCGCCTTATTATCCTGGTTTT
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