FC896012

Overview
NameFC896012
Unique NameFC896012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 55/175 (31.43%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  242 NNQMLGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP--GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE-NKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            N   LG RK       PY WL+YQEV D A   GS +             G++  N PEWII   AC + ++  VPLYDTLG  A+ +IIN A++S   V +  K   +L  + R     LK I+       + K+  ++ GV   S +     G  + + P P +  ++S + +
Sbjct:  105 NGPCLGFRKPKQ----PYQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPLYDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKERGQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCF 275          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 52/175 (29.71%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  242 NNQMLGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE-NKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            N   LG RK       PY WL+YQEV   A   GS +       G     G++  N PEWIIA  AC + ++  VPLYDTLG  ++ +IIN A++    V + +K   +L  + R     LK ++       + ++  ++ GV   S +     G  +   P P +  ++S + +
Sbjct:  105 NGPCLGFRKPEQ----PYQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSISYIINTADICTVIVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRERGKKCGVDIKSMQAIEDCGRENHHAPVPPRPDDLSIVCF 275          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12
Identity = 52/175 (29.71%), Postives = 83/175 (47.43%), Query Frame = 2
Query:  242 NNQMLGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE-NKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            N   LG RK       PY WL+YQEV   A   GS +       G     G++  N PEWIIA  AC + ++  VPLYDTLG  ++ +IIN A++    V + +K   +L  + R     LK ++       + ++  ++ GV   S +     G  +  +P P +  ++S + +
Sbjct:  105 NGPCLGFRKPEQ----PYQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRERGKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCF 275          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL3_PONAB (Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.471e-11
Identity = 51/178 (28.65%), Postives = 84/178 (47.19%), Query Frame = 2
Query:  101 EARPAADGKPSAGPVYRCIYAKDGLLESPV-GLESPWQFFCDSAKRIPNNQMLGRRKV--------SDGKV------GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ----ENKIPSILSCLPR 577
            +A+P  + KP +   YR + + DGL      G ++  + F  +  +  N ++LG R+V         +GK+      G Y WL+Y++V+  A  FG+ ++  G  P     I+     EW+IA +AC       V LY TLG  A+   +N  EV+         + K+  I+S +PR
Sbjct:   56 KAKPV-NSKPDSA--YRSVNSLDGLASVLYPGCDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNETEVTNIITSKELLQTKLKDIVSLVPR 230          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL3_HUMAN (Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.471e-11
Identity = 51/178 (28.65%), Postives = 84/178 (47.19%), Query Frame = 2
Query:  101 EARPAADGKPSAGPVYRCIYAKDGLLESPV-GLESPWQFFCDSAKRIPNNQMLGRRKV--------SDGKV------GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ----ENKIPSILSCLPR 577
            +A+P  + KP +   YR + + DGL      G ++  + F  +  +  N ++LG R+V         +GK+      G Y WL+Y++V+  A  FG+ ++  G  P     I+     EW+IA +AC       V LY TLG  A+   +N  EV+         + K+  I+S +PR
Sbjct:   56 KAKPV-NSKPDSA--YRSVNSLDGLASVLYPGCDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNETEVTNIITSKELLQTKLKDIVSLVPR 230          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL3_MOUSE (Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 51/178 (28.65%), Postives = 84/178 (47.19%), Query Frame = 2
Query:  101 EARPAADGKPSAGPVYRCIYAKDGLLESPV-GLESPWQFFCDSAKRIPNNQMLGRRKV--------SDGKV------GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ----ENKIPSILSCLPR 577
            +A+P +    SA   YR I + DGL      G ++  + F  +  +  N ++LG R++         +GK+      G Y WL+Y++V+  A+ FG+ ++  G  P     I+     EW+IA +AC       V LY TLG  A+   +N  EV+         + K+  I+S +PR
Sbjct:   56 KAKPVSSKPDSA---YRSINSVDGLASVLYPGCDTLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDVFIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNIITSKELLQTKLKEIVSLVPR 230          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL3_RAT (Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 50/178 (28.09%), Postives = 84/178 (47.19%), Query Frame = 2
Query:  101 EARPAADGKPSAGPVYRCIYAKDGLLESPV-GLESPWQFFCDSAKRIPNNQMLGRRKV--------SDGKV------GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ----ENKIPSILSCLPR 577
            +A+P +    SA   YR + + DGL      G ++  + F  +  +  + ++LG R++         +GKV      G Y WL+Y++V+  A+ FG+ ++  G  P     I+     EW+IA +AC       V LY TLG  A+   +N  EV+         + K+  I+S +PR
Sbjct:   56 KAKPVSSKPDSA---YRSVNSMDGLASVLYPGCDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLSYEDVFIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNIITSKELLQTKLKDIVSLVPR 230          
The following BLAST results are available for this feature:
BLAST of FC896012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ACSL6_HUMAN5.971e-1331.43Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
ACSL6_MOUSE1.737e-1229.71Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]
ACSL6_RAT2.269e-1229.71Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSL3_PONAB1.471e-1128.65Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abeli... [more]
ACSL3_HUMAN1.471e-1128.65Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapien... [more]
ACSL3_MOUSE3.276e-1128.65Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculu... [more]
ACSL3_RAT9.533e-1128.09Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA59AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA59AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC896012 ID=FC896012; Name=FC896012; organism=Citrus clementina; type=EST; length=751bp
TTAAATTCAACAAATTACTCTAAAAGCTTATTAGCTGCATAATTTCTCGC
ATATTTTGTTGGTGGCAACAATGTCTGAGACCTATACTGTCAAAGTTGAA
GAAGCAAGGCCTGCTGCCGATGGCAAGCCGTCGGCCGGCCCGGTTTATCG
GTGCATTTATGCGAAAGATGGGTTACTAGAGTCACCGGTCGGTTTGGAGT
CTCCATGGCAGTTTTTTTGTGATTCTGCCAAAAGGATTCCAAATAACCAA
ATGCTGGGTCGACGCAAAGTCAGTGACGGAAAGGTTGGTCCTTATGTGTG
GCTCACATACCAAGAGGTCTATGATGCTGCGATTCGTTTCGGTTCCGCCA
TGAGGAGCCGTGGTGTCAATCCTGGAGATCGTTGCGGTATTTATGGATCT
AATTGCCCTGAATGGATTATAGCTATGGAGGCTTGTAATAGCCAGGCCAT
AACGTATGTACCACTATATGACACCCTAGGTGCTAATGCGGTGGAGTTCA
TCATCAATCATGCTGAAGTTTCAATAGCTTTTGTTCAGGAGAACAAAATC
CCTTCTATTCTATCTTGCCTTCCAAGGTGTTGTTTGTACTTAAAAACTAT
TGTCAGCTTTGCAAATGTTTCTAGCTCACAGAAGAAGGAAGCTGAAGAAC
TTGGGGTCTCTTGCTTTTCTTGGGAGGAATTTCTACAGTTGGGAACTCTG
GATTGTGAACTTCCACCGAAAAAGAAGACCAACATTTCCACAATAATGTA
T
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