FC899056

Overview
NameFC899056
Unique NameFC899056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC899056 vs. ExPASy Swiss-Prot
Match: GH39_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.9 OS=Oryza sativa subsp. japonica GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.420e-29
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 2 
Query:  542 LFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYAQMLCGLLEREQVLRLGAVFASGLLRAIRFLQLHWQALASDIESGTVNQKITDP 871
            +FVKSET+T GGL A   LTS YKSE FK+        YTSP  AILC D+FQSMYAQM+CGL +R  V+R GAVFA+ L+RAIRFLQL+W  LA+DIE+G +   + DP
Sbjct:    1 MFVKSETKTRGGLTAWFALTSVYKSEQFKSMAI----AYTSPTAAILCEDAFQSMYAQMVCGLCQRHDVVRFGAVFAAALVRAIRFLQLNWGQLAADIEAGELGPHVADP 106
The following BLAST results are available for this feature:
BLAST of FC899056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GH39_ORYSJ4.420e-2960.00Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA36AG10RM2 IVIA1 Citrus clementina cDNA clone IC0AAA36AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899056 ID=FC899056; Name=FC899056; organism=Citrus clementina; type=EST; length=873bp
CTTCAAGAACTCATATTTCACCCATTAAAAACAATTAAAAACAAATCTCT
CTATTTCACTCCATAAAAGCTCTCTTAAAATGGCCGTCGATTCAGCACTT
TCATCACCACTCGGCCCTCCAGCATGTGAAAAAGATGCAAAAGCTTTAAG
ATTCATTGAGGAAATGACCCGAAATGCCGAGGCGGTTCAAGAGAAGGTCC
TGGCCGAAATCTTGAGCCGTAACGCCGACGTTGAATACCTGAAACGGTAC
AAACTCGGCGGAGCAACTGACAGGGAAACGTTCAAGTCAAAGCTTCCGAT
AATCAAATACGAAGATCTTCAGCCTGAAATTCAACGTATTGCCAACGGCG
ATCGTTCTGCTATCTTGTCAGCTCACCCCATCTCCGAATTCCTCACCAGT
TCTGGGACTTCGGCTGGTGAAAGAAAGCTGATGCCAACGATTCAAGAAGA
GCTGGATCGTCGCCAGCTTCTGTACAGTCTTCTAATGCCAGTGATGAATC
TTTATGTGCCTGGCTTGGACAAAGGCAAAGCCCTCTACTTCTTGTTCGTG
AAATCCGAAACGCGGACCCCAGGAGGGCTCTTGGCTCGCCCTGTGCTGAC
CAGCTACTACAAAAGTGAGCACTTCAAGACTCGACCGTATGACCCTTACA
ATGTCTACACAAGCCCAAACGAGGCCATCCTTTGCGCTGACTCGTTCCAG
AGCATGTACGCACAAATGCTTTGCGGCTTGTTGGAGCGTGAACAAGTTCT
CAGGCTAGGCGCAGTTTTTGCCTCTGGCCTACTCAGGGCCATCAGATTTC
TTCAGCTTCACTGGCAAGCTCTTGCTAGTGATATTGAATCCGGGACAGTG
AACCAGAAAATCACTGACCCCTT
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