FC899093

Overview
NameFC899093
Unique NameFC899093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7832 contig Ccv1_Contig7832:1..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_CHICK (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Gallus gallus GN=SDHA PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.277e-15
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:   52 QLQVRNFSRTAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            Q   RNF  T    K  +        + S  ++ +YP++DHE+D                      NTAC++KLFPTRSHTVAAQGGINAALGNM  D+W
Sbjct:   28 QTHARNFHFTVDGKKNAST-------KVSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNW 120          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSAB_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial OS=Xenopus laevis GN=sdha-B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  130 EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            + S  ++ +YP++DH++D                      NTACI+KLFPTRSHTVAAQGGINAALGNM  DDW
Sbjct:   49 KVSDSISTQYPVVDHDFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDW 122          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_XENTR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.883e-15
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  136 SPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            S  ++ +YP++DH++D                      NTACI+KLFPTRSHTVAAQGGINAALGNM  DDW
Sbjct:   51 SDSISTQYPVVDHDFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDW 122          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_MOUSE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Mus musculus GN=Sdha PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.883e-15
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 1
Query:  130 EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            + S  ++ +YP++DHE+D                      NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W
Sbjct:   46 KVSDAISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNW 119          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.883e-15
Identity = 47/103 (45.63%), Postives = 55/103 (53.40%), Query Frame = 1
Query:   49 RQLQVRNFSRTAPANKIITPNGPLRAKEASPLLNNK--YPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            R L+V + SR + +N     +   R   A P   +K  Y I+DH YD                      NTACI+KLFPTRSHTVAAQGGINAALGNM  DDW
Sbjct:    3 RCLRVASSSRRSESNGAFITSQLSRFFSAPPSAGDKSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSVDDW 105          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.293e-14
Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  148 NNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            ++ Y ++DH YD                      NTACI+KLFPTRSHTVAAQGGINAALGNM +DDW
Sbjct:   36 SSSYTVVDHSYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDW 103          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.293e-14
Identity = 37/67 (55.22%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  151 NKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            + Y I+DH YD                      NTACI+KLFPTRSHTVAAQGGINAALGNM +DDW
Sbjct:   41 SSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDW 107          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_DROME (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Drosophila melanogaster GN=Scs-fp PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.607e-14
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  109 NGPLRAKEASP-LLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            +G  +A  A+P  ++ +YP++DH YD                       TA I+KLFPTRSHT+AAQGGINAALGNM +DDW
Sbjct:   35 HGRQQASAANPDKISKQYPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEEDDW 116          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12
Identity = 36/69 (52.17%), Postives = 40/69 (57.97%), Query Frame = 1
Query:  145 LNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            +   Y II H++D                      NTACISKLFPTRSHTVAAQGGI+AALGNM  DDW
Sbjct:    1 MTKSYNIIHHKFDVIVVGAGGAGLRAAFGMAEEGLNTACISKLFPTRSHTVAAQGGISAALGNMGADDW 69          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_DICDI (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.804e-12
Identity = 34/65 (52.31%), Postives = 38/65 (58.46%), Query Frame = 1
Query:  157 YPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            Y ++DH YD                       TACI+KLFPTRSHTVAAQGGINAALGN  +DDW
Sbjct:   33 YAVVDHTYDAIVVGAGGAGLRAALGLTEKGYKTACITKLFPTRSHTVAAQGGINAALGNADQDDW 97          
The following BLAST results are available for this feature:
BLAST of FC899093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DHSA_CHICK2.277e-1542.00Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSAB_XENLA2.973e-1550.00Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_XENTR3.883e-1551.39Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_MOUSE3.883e-1548.65Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA2_ARATH3.883e-1545.63Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_ORYSJ4.293e-1452.94Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA1_ARATH4.293e-1455.22Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DROME5.607e-1446.34Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RICBR1.381e-1252.17Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_DICDI1.804e-1252.31Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA89DB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA89DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899093 ID=FC899093; Name=FC899093; organism=Citrus clementina; type=EST; length=353bp
ATGTACTCGTCCGGCATGAGGCAGTTCGGCGCCGCCTCGAGGCTTTCGCG
CCAGCTTCAGGTCCGCAACTTCTCTCGCACAGCGCCCGCAAACAAGATCA
TCACCCCCAATGGCCCTCTACGCGCCAAGGAGGCCTCTCCCCTGCTCAAC
AACAAGTACCCCATCATCGACCACGAGTACGATGCCCTCGTCGTCGGCGC
CGGTGGTGCCGGTCTGCGCGCCGCCTTCGGTCTCGCAGAGGCCGGCTTCA
ACACTGCCTGTATCTCGAAGCTCTTCCCCACCAGATCACACACTGTCGCC
GCCCAGGGTGGTATCAACGCCGCGCTAGGAAACATGCACAAGGACGACTG
GAG
back to top