FC899093

Overview
NameFC899093
Unique NameFC899093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_RICFE (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis GN=sdhA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.356e-12
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  145 LNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            +   Y II H++D                      NTACI+KLFPTRSHTVAAQGGI+AALGNM +DDW
Sbjct:    1 MTKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKLFPTRSHTVAAQGGISAALGNMGEDDW 69          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_RICCN (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii GN=sdhA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.356e-12
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  145 LNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            +   Y II H++D                      NTACI+KLFPTRSHTVAAQGGI+AALGNM +DDW
Sbjct:    1 MTKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKLFPTRSHTVAAQGGISAALGNMGEDDW 69          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_RICTY (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia typhi GN=sdhA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.018e-12
Identity = 34/69 (49.28%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  145 LNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            +   Y II H++D                      NTACI+K+FPTRSHTVAAQGGI+AALGNM +DDW
Sbjct:    1 MTKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKIFPTRSHTVAAQGGISAALGNMGEDDW 69          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_RICPR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia prowazekii GN=sdhA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.018e-12
Identity = 34/69 (49.28%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  145 LNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            +   Y II H++D                      NTACI+K+FPTRSHTVAAQGGI+AALGNM +DDW
Sbjct:    1 MTKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKIFPTRSHTVAAQGGISAALGNMGEDDW 69          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_CAEEL (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Caenorhabditis elegans GN=sdha-1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.527e-11
Identity = 33/66 (50.00%), Postives = 39/66 (59.09%), Query Frame = 1
Query:  154 KYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            +Y ++DH YD                       TA I+KLFPTRSHTVAAQGGINAALGNM+ D+W
Sbjct:   35 QYKVVDHAYDAVVVGAGGAGLRAAMGLAEGGLKTAVITKLFPTRSHTVAAQGGINAALGNMNPDNW 100          
The following BLAST results are available for this feature:
BLAST of FC899093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DHSA_RICFE2.356e-1250.72Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICCN2.356e-1250.72Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICTY4.018e-1249.28Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICPR4.018e-1249.28Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_CAEEL1.527e-1150.00Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA89DB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA89DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899093 ID=FC899093; Name=FC899093; organism=Citrus clementina; type=EST; length=353bp
ATGTACTCGTCCGGCATGAGGCAGTTCGGCGCCGCCTCGAGGCTTTCGCG
CCAGCTTCAGGTCCGCAACTTCTCTCGCACAGCGCCCGCAAACAAGATCA
TCACCCCCAATGGCCCTCTACGCGCCAAGGAGGCCTCTCCCCTGCTCAAC
AACAAGTACCCCATCATCGACCACGAGTACGATGCCCTCGTCGTCGGCGC
CGGTGGTGCCGGTCTGCGCGCCGCCTTCGGTCTCGCAGAGGCCGGCTTCA
ACACTGCCTGTATCTCGAAGCTCTTCCCCACCAGATCACACACTGTCGCC
GCCCAGGGTGGTATCAACGCCGCGCTAGGAAACATGCACAAGGACGACTG
GAG
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