FC899094

Overview
NameFC899094
Unique NameFC899094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4940 contig Ccv1_Contig4940:1..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_SCHPO (Elongation factor G, mitochondrial OS=Schizosaccharomyces pombe GN=mef1 PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 3.548e-73
Identity = 138/189 (73.02%), Postives = 160/189 (84.66%), Query Frame = 3
Query:  279 IVENLDPKEAARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELK-----DEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            I E L+  +  RL ++RNIGI+AHIDSGKTT TERVL+YTGRIKDIHEVRGKD VGAKMD M+LEREKGITIQSAAT C W ++T D +    K     ++ Y+IN+IDTPGHIDFTIEVERALRVLDGAV++LCAVSGVQSQT+TVDRQM+RYNVPR+SFVNKMDR GA+PWK ++ IN KLKIPAAA
Sbjct:   44 IQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAATHCTW-ERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGADPWKVIQQINTKLKIPAAA 231          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_USTMA (Elongation factor G, mitochondrial OS=Ustilago maydis GN=MEF1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.348e-72
Identity = 155/289 (53.63%), Postives = 187/289 (64.71%), Query Frame = 3
Query:   12 VRLTMRATALARNALRQQPALRN--AVNPSSTSYRTFASAAALPSSRLQTPTFASQKTPRTVQYQSRRWNXXXXXXXXXXXHDPSSLTQDAIVENLDPKEAARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDP----VTGEL----------KDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            +R T  A+A  R A+   P  R+  +    S+S R  A+AAA  ++   TP      TP  V                                 L   +  RL + RN+GI+AHIDSGKTT TERVLFYTGRIKDIHEVRG+DAVGAKMD M+LEREKGITIQSAAT+C W K TP      V+G+           K + +HIN+IDTPGH+DFTIEVERALRVLDGAV++LCAVSGVQSQT+TVDRQM+RY+VPR+SF+NKMDRAGANPW+ +  I  KLK+PAAA
Sbjct:   22 LRTTSFASAPVRIAIASTPLARSPSSFRSLSSSTRRSAAAAAAAAAAKATPAHDDSHTPMAV---------------------------------LTEADLGRLVRQRNVGISAHIDSGKTTLTERVLFYTGRIKDIHEVRGRDAVGAKMDHMELEREKGITIQSAATYCSW-KATPPTEKASVSGDAANVESKELMEKKQDFHINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYSVPRISFINKMDRAGANPWRVIGQIRNKLKMPAAA 276          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_SCHJY (Elongation factor G, mitochondrial OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=mef1 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.004e-72
Identity = 135/172 (78.49%), Postives = 155/172 (90.12%), Query Frame = 3
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            L ++RNIGI+AHIDSGKTT TERVLFYTGRIKDIHEVRGKD VGAKMDSM+LEREKGITIQSAAT+C+W +K  D   G+ +D  Y IN+IDTPGHIDFTIEVERALRVLDGAV+ILCAVSGVQSQT+TVDRQM+RYNVPR++F+NKMDR GANPW+A+E +N KL+I AAA
Sbjct:   59 LSRLRNIGISAHIDSGKTTFTERVLFYTGRIKDIHEVRGKDNVGAKMDSMELEREKGITIQSAATYCNWKRKQKD---GDEQD--YIINIIDTPGHIDFTIEVERALRVLDGAVLILCAVSGVQSQTITVDRQMRRYNVPRITFINKMDRMGANPWRAIEQLNAKLRIAAAA 225          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_MALGO (Elongation factor G, mitochondrial OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.740e-72
Identity = 136/189 (71.96%), Postives = 159/189 (84.13%), Query Frame = 3
Query:  303 EAARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDP----VTGELKDEK---------YHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            +  RL + RN+GI+AHIDSGKTT TERVL+YTGRIKDIHEVRG+D VGAKMDSM+LEREKGITIQSAAT+C+W K TP      +TG+  DE          YHIN+IDTPGH+DFTIEVERALRVLDGAV++LCAVSGVQSQT+TVDRQM+RY+VPR+SF+NKMDRAGANPW+ VE I  KL++PAAA
Sbjct:   29 DVERLLRQRNVGISAHIDSGKTTLTERVLYYTGRIKDIHEVRGRDEVGAKMDSMELEREKGITIQSAATYCNW-KATPPTERSNMTGDAADESTVTTQKKHDYHINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVSGVQSQTMTVDRQMRRYSVPRLSFINKMDRAGANPWRVVEQIRTKLRMPAAA 216          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_YEAST (Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae GN=MEF1 PE=1 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.491e-71
Identity = 134/194 (69.07%), Postives = 159/194 (81.96%), Query Frame = 3
Query:  249 HDPSSLTQDAIVENLDPKEAARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            ++   +  D I + L P +  R +K+RNIGI+AHIDSGKTT TERVL+YT RIK IHEVRG+D VGAKMDSMDLEREKGITIQSAAT+C W K+           + YH NLIDTPGHIDFTIEVERALRVLDGAV+++CAVSGVQSQTVTVDRQM+RYNVPRV+F+NKMDR G++P++A+E +N KLKIPAAA
Sbjct:   45 YEEEKVLVDEIKQKLTPDDIGRCNKLRNIGISAHIDSGKTTFTERVLYYTKRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWDKE----------GKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGSDPFRAIEQLNSKLKIPAAA 228          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_PICGU (Elongation factor G, mitochondrial OS=Pichia guilliermondii GN=MEF1 PE=3 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.491e-71
Identity = 140/226 (61.95%), Postives = 168/226 (74.34%), Query Frame = 3
Query:  153 TPTFASQKTPRTVQYQSRRWNXXXXXXXXXXXHDPSSLTQDAIVENLDPKEAARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            +PT  S    R      RR++           ++   +  D I ++L  K+ A   ++RNIG++AHIDSGKTT TERVL+YTGRIK IHEVRG+DAVGAKMD M+LEREKGITIQSAAT+C W K           D+ YH NLIDTPGHIDFTIEVERALRVLDGAV+++CAVSGVQSQTVTVDRQM+RYNVPRV+F+NKMDR GA+P++A+E IN KLK PAAA
Sbjct:   18 SPTVVSSSLHRNFHSSIRRFDEKIPET-----YEEEKVIIDEINQSLTEKDLASSSRLRNIGVSAHIDSGKTTFTERVLYYTGRIKAIHEVRGRDAVGAKMDHMELEREKGITIQSAATYCSWDKD----------DKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGADPFRAIEQINLKLKTPAAA 228          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_YEAS7 (Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.947e-71
Identity = 134/194 (69.07%), Postives = 159/194 (81.96%), Query Frame = 3
Query:  249 HDPSSLTQDAIVENLDPKEAARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            ++   +  D I + L P +  R +K+RNIGI+AHIDSGKTT TERVL+YT RIK IHEVRG+D VGAKMDSMDLEREKGITIQSAAT+C W K+           + YH NLIDTPGHIDFTIEVERALRVLDGAV+++CAVSGVQSQTVTVDRQM+RYNVPRV+F+NKMDR G++P++A+E +N KLKIPAAA
Sbjct:   45 YEEEKVLVDEIKQKLTPDDIERCNKLRNIGISAHIDSGKTTFTERVLYYTKRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWDKE----------GKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGSDPFRAIEQLNSKLKIPAAA 228          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_YEAS6 (Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae (strain AWRI1631) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.947e-71
Identity = 134/194 (69.07%), Postives = 159/194 (81.96%), Query Frame = 3
Query:  249 HDPSSLTQDAIVENLDPKEAARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            ++   +  D I + L P +  R +K+RNIGI+AHIDSGKTT TERVL+YT RIK IHEVRG+D VGAKMDSMDLEREKGITIQSAAT+C W K+           + YH NLIDTPGHIDFTIEVERALRVLDGAV+++CAVSGVQSQTVTVDRQM+RYNVPRV+F+NKMDR G++P++A+E +N KLKIPAAA
Sbjct:   45 YEEEKVLVDEIKQKLTPDDIERCNKLRNIGISAHIDSGKTTFTERVLYYTKRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWDKE----------GKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGSDPFRAIEQLNSKLKIPAAA 228          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_YEAS1 (Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae (strain RM11-1a) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.947e-71
Identity = 134/194 (69.07%), Postives = 159/194 (81.96%), Query Frame = 3
Query:  249 HDPSSLTQDAIVENLDPKEAARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            ++   +  D I + L P +  R +K+RNIGI+AHIDSGKTT TERVL+YT RIK IHEVRG+D VGAKMDSMDLEREKGITIQSAAT+C W K+           + YH NLIDTPGHIDFTIEVERALRVLDGAV+++CAVSGVQSQTVTVDRQM+RYNVPRV+F+NKMDR G++P++A+E +N KLKIPAAA
Sbjct:   45 YEEEKVLVDEIKQKLTPDDIERCNKLRNIGISAHIDSGKTTFTERVLYYTKRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWDKE----------GKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGSDPFRAIEQLNSKLKIPAAA 228          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_KLULA (Elongation factor G, mitochondrial OS=Kluyveromyces lactis GN=MEF1 PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.338e-71
Identity = 135/186 (72.58%), Postives = 154/186 (82.80%), Query Frame = 3
Query:  273 DAIVENLDPKEAARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAAA 830
            D I   L  K+     K+RNIGI+AHIDSGKTT TERVL+YTGRIK IHEVRG+D VGAKMDSMDLEREKGITIQSAAT+C W K           +E YH NLIDTPGHIDFTIEVERALR+LDGAV+++CAVSGVQSQTVTVDRQM+RYNVPRV+F+NKMDR GANP++++E IN KL+IPAAA
Sbjct:   48 DEIQPLLSEKDIDASKKLRNIGISAHIDSGKTTFTERVLYYTGRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWDKD----------NESYHFNLIDTPGHIDFTIEVERALRILDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGANPFRSIEQINNKLRIPAAA 223          
The following BLAST results are available for this feature:
BLAST of FC899094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFGM_SCHPO3.548e-7373.02Elongation factor G, mitochondrial OS=Schizosaccha... [more]
EFGM_USTMA1.348e-7253.63Elongation factor G, mitochondrial OS=Ustilago may... [more]
EFGM_SCHJY3.004e-7278.49Elongation factor G, mitochondrial OS=Schizosaccha... [more]
EFGM_MALGO8.740e-7271.96Elongation factor G, mitochondrial OS=Malassezia g... [more]
EFGM_YEAST1.491e-7169.07Elongation factor G, mitochondrial OS=Saccharomyce... [more]
EFGM_PICGU1.491e-7161.95Elongation factor G, mitochondrial OS=Pichia guill... [more]
EFGM_YEAS71.947e-7169.07Elongation factor G, mitochondrial OS=Saccharomyce... [more]
EFGM_YEAS61.947e-7169.07Elongation factor G, mitochondrial OS=Saccharomyce... [more]
EFGM_YEAS11.947e-7169.07Elongation factor G, mitochondrial OS=Saccharomyce... [more]
EFGM_KLULA4.338e-7172.58Elongation factor G, mitochondrial OS=Kluyveromyce... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA43CB08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA43CB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899094 ID=FC899094; Name=FC899094; organism=Citrus clementina; type=EST; length=831bp
CAACACATCACGTTCGTTTGACAATGCGAGCCACAGCCCTCGCGCGCAAT
GCCTTGCGCCAGCAGCCTGCCTTGCGCAATGCCGTAAACCCTTCTTCCAC
CTCCTACCGCACATTCGCCTCCGCCGCCGCCCTCCCTTCATCACGCCTTC
AGACTCCCACCTTTGCATCACAAAAGACACCACGCACAGTACAATACCAG
TCCCGGAGATGGAACGCCACTGCCCAGGCCATCCAGGAAGCCGCCGCCCA
CGACCCTTCAAGTCTCACCCAGGACGCGATCGTGGAGAACCTCGACCCCA
AGGAGGCCGCCCGTCTCGACAAGGTCAGGAATATCGGTATCGCAGCCCAC
ATTGATTCCGGAAAGACCACCGCCACCGAGCGCGTGCTGTTTTACACCGG
TCGTATCAAGGATATCCACGAGGTCCGTGGCAAAGATGCCGTGGGCGCAA
AAATGGACAGTATGGACCTCGAGAGGGAAAAGGGAATCACCATCCAGTCT
GCCGCCACATTCTGTGACTGGGTCAAGAAGACTCCTGATCCCGTCACCGG
CGAGCTCAAGGATGAGAAATACCACATCAACTTGATCGACACCCCCGGTC
ATATCGACTTCACCATTGAAGTCGAGCGTGCATTGCGTGTCTTGGACGGC
GCAGTCATGATCCTTTGCGCTGTCTCTGGTGTGCAGTCGCAGACCGTCAC
CGTCGACAGGCAGATGAAGCGCTACAACGTCCCGCGTGTCAGCTTCGTCA
ACAAGATGGACCGCGCCGGTGCCAACCCTTGGAAGGCCGTCGAGGGCATC
AACCAGAAGCTCAAGATTCCCGCTGCCGCCG
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