FC899094

Overview
NameFC899094
Unique NameFC899094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4940 contig Ccv1_Contig4940:1..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG1_SYNAS (Elongation factor G 1 OS=Syntrophus aciditrophicus (strain SB) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.311e-56
Identity = 108/166 (65.06%), Postives = 130/166 (78.31%), Query Frame = 3
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKL 812
            + KVRNIGI+AHIDSGKTT TER+LFYT RI  +H+V+GKD VGA MDSM+LERE+GITI SAATFC W                + +N+IDTPGH+DFTIEVERALRVLDGA+++LCAV GVQSQ++TVD QMKRY VP V+FVNK DR+GANP + VE +  +L
Sbjct:    5 IKKVRNIGISAHIDSGKTTLTERILFYTKRIHAMHDVKGKDGVGATMDSMELERERGITISSAATFCTW--------------GDHEVNIIDTPGHVDFTIEVERALRVLDGAILVLCAVGGVQSQSITVDAQMKRYKVPCVAFVNKCDRSGANPARVVEQLKTRL 156          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_RAT (Elongation factor G, mitochondrial OS=Rattus norvegicus GN=Gfm1 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.018e-56
Identity = 109/170 (64.12%), Postives = 134/170 (78.82%), Query Frame = 3
Query:  318 DKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAA 827
            +K+RNIGI+AHIDSGKTT TERVL+YTGRI  +HEV+GKD VGA MDSM+LER++GITIQSAAT+  W                 +IN+IDTPGH+DFTIEVERALRVLDGAV++LCAV GVQ QT+TV RQMKRYNVP ++F+NK+DR G+NP +A++ +  KL   AA
Sbjct:   45 EKIRNIGISAHIDSGKTTLTERVLYYTGRIATMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMW--------------RDVNINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVSRQMKRYNVPFLTFINKLDRMGSNPARALQQMRSKLNHNAA 200          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_XENLA (Elongation factor G, mitochondrial OS=Xenopus laevis GN=gfm1 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.148e-56
Identity = 111/170 (65.29%), Postives = 136/170 (80.00%), Query Frame = 3
Query:  318 DKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAA 827
            +++RNIGI+AHIDSGKTT TERVL+YTGRI  +HEV+GKD VGA MDSM+LER++GITIQSAAT+  W            KD   +IN+IDTPGH+DFTIEVERALRVLDGAV++LCAV GVQ QT+TV+RQMKRYNVP ++F+NK+DR G+NP +AV  +  KL   AA
Sbjct:   42 ERIRNIGISAHIDSGKTTLTERVLYYTGRIAHMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMW------------KDT--NINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVNRQMKRYNVPFLTFINKLDRMGSNPSRAVLQLRSKLNHNAA 197          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFGM_NEMVE (Elongation factor G, mitochondrial OS=Nematostella vectensis GN=v1g236547 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.147e-55
Identity = 107/169 (63.31%), Postives = 135/169 (79.88%), Query Frame = 3
Query:  321 KVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPAA 827
            ++RNIGI+AHIDSGKTT TER+LFYTGRI  +HEV+GKD VGA MDSM+LER++GITIQSAAT+ +W              + ++IN+IDTPGH+DFT+EVERALRVLDGAV++LCAV GVQSQT+TV+RQMKRYNVP ++F+NK+DR GAN  + +  +  KL   AA
Sbjct:   39 RLRNIGISAHIDSGKTTLTERLLFYTGRISHMHEVKGKDNVGATMDSMELERQRGITIQSAATYVNW--------------KDHNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCIAFINKLDRMGANHNRVLSQLRAKLNHNAA 193          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG2_TREDE (Elongation factor G 2 OS=Treponema denticola GN=fusA2 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.163e-54
Identity = 103/170 (60.59%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPA 824
            + K+RNIGI+AHIDSGKTT +ER+LFY  RI  +HEVRGKD VGA MD+M+LE+E+GITIQSA+T   W              + Y +N+IDTPGH+DFTIEVER+LRVLDGA+++LC+V GVQSQ++TVDRQ+KRY+VPR++FVNK DR GANP+K    + +KL + A
Sbjct:    5 ISKMRNIGISAHIDSGKTTLSERILFYCDRIHALHEVRGKDGVGATMDNMELEKERGITIQSASTQVKW--------------KDYTVNVIDTPGHVDFTIEVERSLRVLDGAILVLCSVGGVQSQSITVDRQLKRYHVPRIAFVNKCDRTGANPFKVRMQLREKLGLNA 160          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG1_TREPA (Elongation factor G 1 OS=Treponema pallidum GN=fusA PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.163e-54
Identity = 105/166 (63.25%), Postives = 130/166 (78.31%), Query Frame = 3
Query:  327 RNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPA 824
            RNIGI+AHIDSGKTT +ER+LFY  RI  IHEVRGKD VGA MD+M+LERE+GITIQSA+T   W   T              IN+IDTPGH+DFTIEVER+LRVLDGAV++LC+V+GVQSQ++TVDRQ++RY+VPR+SF+NK DR GANP+K    + +KL + A
Sbjct:    9 RNIGISAHIDSGKTTLSERILFYCDRIHAIHEVRGKDGVGATMDNMELERERGITIQSASTQVQWKGHT--------------INVIDTPGHVDFTIEVERSLRVLDGAVLVLCSVAGVQSQSITVDRQLRRYHVPRISFINKCDRTGANPFKVCAQLREKLSLNA 160          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG1_BORBU (Elongation factor G 1 OS=Borrelia burgdorferi GN=fusA PE=3 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 5.327e-53
Identity = 101/167 (60.48%), Postives = 131/167 (78.44%), Query Frame = 3
Query:  318 DKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKI 818
            +K+RNIGI+AHIDSGKTT TER+LFY  +I  IHEV+GKD VGA MDSM+LERE+GITI SAAT  +W              + + IN+IDTPGH+DFTIEVER+LRVLDGA+++L +V+GVQSQ++TVDRQ+KRY+VPR++FVNK D+ GANP+   + +  KL +
Sbjct:    4 NKLRNIGISAHIDSGKTTLTERILFYCNKIHAIHEVKGKDGVGATMDSMELERERGITIASAATHVEW--------------KDFPINIIDTPGHVDFTIEVERSLRVLDGAILVLDSVAGVQSQSITVDRQLKRYSVPRLAFVNKCDKTGANPYNVKDQLRSKLDL 156          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG1_BORAP (Elongation factor G 1 OS=Borrelia afzelii (strain PKo) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.327e-53
Identity = 101/167 (60.48%), Postives = 131/167 (78.44%), Query Frame = 3
Query:  318 DKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKI 818
            +K+RNIGI+AHIDSGKTT TER+LFY  +I  IHEV+GKD VGA MDSM+LERE+GITI SAAT  +W              + + IN+IDTPGH+DFTIEVER+LRVLDGA+++L +V+GVQSQ++TVDRQ+KRY+VPR++FVNK D+ GANP+   + +  KL +
Sbjct:    4 NKLRNIGISAHIDSGKTTLTERILFYCNKIHAIHEVKGKDGVGATMDSMELERERGITIASAATHVEW--------------KDFPINIIDTPGHVDFTIEVERSLRVLDGAILVLDSVAGVQSQSITVDRQLKRYSVPRLAFVNKCDKTGANPYNVKDQLRSKLDL 156          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG1_BORGA (Elongation factor G 1 OS=Borrelia garinii GN=fusA1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.957e-53
Identity = 101/167 (60.48%), Postives = 131/167 (78.44%), Query Frame = 3
Query:  318 DKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKI 818
            +K+RNIGI+AHIDSGKTT TER+LFY  +I  IHEV+GKD VGA MDSM+LERE+GITI SAAT  +W              + + IN+IDTPGH+DFTIEVER+LRVLDGA+++L +V+GVQSQ++TVDRQ+KRY+VPR++FVNK D+ GANP+   + +  KL +
Sbjct:    4 NKLRNIGISAHIDSGKTTLTERILFYCNKIHAIHEVKGKDGVGATMDSMELERERGITIASAATHVEW--------------KDFPINIIDTPGHVDFTIEVERSLRVLDGAILVLDSVAGVQSQSITVDRQLKRYSVPRLAFVNKCDKTGANPYNVRDQLRSKLDL 156          
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_RHOBA (Elongation factor G OS=Rhodopirellula baltica GN=fusA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.087e-53
Identity = 104/166 (62.65%), Postives = 129/166 (77.71%), Query Frame = 3
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKL 812
            L+KVRNIGI+AHIDSGKTT +ER+LFY+GRI  I +VRG    GA MD M+LE+E+GITI SAAT               +    YHINLIDTPGH+DFT+EVER+LRVLDGAV++LC+V GVQSQ++TVDRQMKRY +PR++F+NKMDR GANP + VE + +KL
Sbjct:    3 LEKVRNIGISAHIDSGKTTLSERILFYSGRIHKIEDVRG-GGDGATMDHMELEKERGITITSAAT--------------SVTHNGYHINLIDTPGHVDFTVEVERSLRVLDGAVLVLCSVGGVQSQSITVDRQMKRYQIPRLAFINKMDRTGANPRRVVEQLREKL 153          
The following BLAST results are available for this feature:
BLAST of FC899094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG1_SYNAS2.311e-5665.06Elongation factor G 1 OS=Syntrophus aciditrophicus... [more]
EFGM_RAT3.018e-5664.12Elongation factor G, mitochondrial OS=Rattus norve... [more]
EFGM_XENLA5.148e-5665.29Elongation factor G, mitochondrial OS=Xenopus laev... [more]
EFGM_NEMVE1.147e-5563.31Elongation factor G, mitochondrial OS=Nematostella... [more]
EFG2_TREDE2.163e-5460.59Elongation factor G 2 OS=Treponema denticola GN=fu... [more]
EFG1_TREPA2.163e-5463.25Elongation factor G 1 OS=Treponema pallidum GN=fus... [more]
EFG1_BORBU5.327e-5360.48Elongation factor G 1 OS=Borrelia burgdorferi GN=f... [more]
EFG1_BORAP5.327e-5360.48Elongation factor G 1 OS=Borrelia afzelii (strain ... [more]
EFG1_BORGA6.957e-5360.48Elongation factor G 1 OS=Borrelia garinii GN=fusA1... [more]
EFG_RHOBA9.087e-5362.65Elongation factor G OS=Rhodopirellula baltica GN=f... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA43CB08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA43CB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899094 ID=FC899094; Name=FC899094; organism=Citrus clementina; type=EST; length=831bp
CAACACATCACGTTCGTTTGACAATGCGAGCCACAGCCCTCGCGCGCAAT
GCCTTGCGCCAGCAGCCTGCCTTGCGCAATGCCGTAAACCCTTCTTCCAC
CTCCTACCGCACATTCGCCTCCGCCGCCGCCCTCCCTTCATCACGCCTTC
AGACTCCCACCTTTGCATCACAAAAGACACCACGCACAGTACAATACCAG
TCCCGGAGATGGAACGCCACTGCCCAGGCCATCCAGGAAGCCGCCGCCCA
CGACCCTTCAAGTCTCACCCAGGACGCGATCGTGGAGAACCTCGACCCCA
AGGAGGCCGCCCGTCTCGACAAGGTCAGGAATATCGGTATCGCAGCCCAC
ATTGATTCCGGAAAGACCACCGCCACCGAGCGCGTGCTGTTTTACACCGG
TCGTATCAAGGATATCCACGAGGTCCGTGGCAAAGATGCCGTGGGCGCAA
AAATGGACAGTATGGACCTCGAGAGGGAAAAGGGAATCACCATCCAGTCT
GCCGCCACATTCTGTGACTGGGTCAAGAAGACTCCTGATCCCGTCACCGG
CGAGCTCAAGGATGAGAAATACCACATCAACTTGATCGACACCCCCGGTC
ATATCGACTTCACCATTGAAGTCGAGCGTGCATTGCGTGTCTTGGACGGC
GCAGTCATGATCCTTTGCGCTGTCTCTGGTGTGCAGTCGCAGACCGTCAC
CGTCGACAGGCAGATGAAGCGCTACAACGTCCCGCGTGTCAGCTTCGTCA
ACAAGATGGACCGCGCCGGTGCCAACCCTTGGAAGGCCGTCGAGGGCATC
AACCAGAAGCTCAAGATTCCCGCTGCCGCCG
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