FC899094

Overview
NameFC899094
Unique NameFC899094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_CHLTE (Elongation factor G OS=Chlorobium tepidum GN=fusA-1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.238e-46
Identity = 94/166 (56.63%), Postives = 120/166 (72.29%), Query Frame = 3 
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKL 812
            LD+VRNIGI AHID+GKTT TER+L+YTGR+  + EV      GA MD M+ E+E+GITI SAAT C W      P  G      + IN+IDTPGH+DFT+EVER+LRVLDGAV + CAV GV+ Q+ TV RQ  +Y VPR+++VNKMDR GAN ++ V+ I ++L
Sbjct:    7 LDRVRNIGIMAHIDAGKTTTTERILYYTGRLHKMGEVHEG---GATMDWMEQEKERGITITSAATTCFWT-----PKYGNYAGLNHRINIIDTPGHVDFTVEVERSLRVLDGAVALFCAVGGVEPQSETVWRQANKYGVPRIAYVNKMDRVGANFFETVKAIRERL 164
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_GLOVI (Elongation factor G OS=Gloeobacter violaceus GN=fusA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.650e-44
Identity = 96/171 (56.14%), Postives = 118/171 (69.01%), Query Frame = 3 
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYH-INLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPA 824
            L++VRNIGIAAHID+GKTT TER+LFY+G I  I EV   + V    D M  ERE+GITI +AA    W ++ P+  T  L     H IN+IDTPGH+DFTIEVER++RVLDG + +LC+V GVQ QT TV RQ  RYNVPR  FVNKMDR GAN +K    +  +L+  A
Sbjct:    7 LERVRNIGIAAHIDAGKTTTTERILFYSGVIHKIGEVHEGNTV---TDWMAQERERGITITAAAITTAWTRRDPENPTQPLPGALEHKINIIDTPGHVDFTIEVERSMRVLDGVITVLCSVGGVQPQTETVWRQANRYNVPRFIFVNKMDRTGANFYKVYSQVRDRLRANA 174
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_SULDN (Elongation factor G OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=fusA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.461e-44
Identity = 97/168 (57.74%), Postives = 114/168 (67.86%), Query Frame = 3 
Query:  312 RLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLK 815
            +L+ VRNIGIAAHID+GKTT TER+LFYTGR   I EV       A MD M+ E+E+GITI SAAT C+W  K               IN+IDTPGH+DFTIEVER++RVLDGAV + CAV GVQ Q+ TV RQ  RY VP + FVNKMDR GAN +   E I  +LK
Sbjct:    6 KLEDVRNIGIAAHIDAGKTTTTERILFYTGREHKIGEVHDG---AATMDWMEQEQERGITITSAATTCEWAGK--------------QINIIDTPGHVDFTIEVERSMRVLDGAVSVFCAVGGVQPQSETVWRQRNRYGVPSIVFVNKMDRTGANFYAVEEQIRTRLK 156
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_TOLAT (Elongation factor G OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=fusA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.904e-44
Identity = 97/171 (56.73%), Postives = 121/171 (70.76%), Query Frame = 3 
Query:  306 AARLDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYH-INLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLK 815
            A  +++ RNIGI+AHID+GKTT TER+LFYTG    I EV       A MD M+ E+E+GITI SAAT C W        +G  K  + H +N+IDTPGH+DFTIEVER++RVLDGAVM+ CAV GVQ Q+ TV RQ  +Y VPR++F+NKMDR GAN  +AVE I  +LK
Sbjct:    4 ATPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFW--------SGMGKQFQPHRVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFINKMDRTGANFLRAVEQIKTRLK 163
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_MAGSM (Elongation factor G OS=Magnetococcus sp. (strain MC-1) GN=fusA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.315e-43
Identity = 97/170 (57.06%), Postives = 118/170 (69.41%), Query Frame = 3 
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPA 824
            LD VRNIGI AHID+GKTT TER+L+YTGR   I EV       A MD M+ E+E+GITI SAAT C W              +++ IN+IDTPGH+DFTIEVER+LRVLDGAV + C V+GVQ Q+ TV RQ  RY VPR++FVNKMDR GA+  KAV+ +  +LK  A
Sbjct:    7 LDHVRNIGIMAHIDAGKTTVTERILYYTGRSHKIGEVHEG---AATMDWMEQEQERGITITSAATTCFW--------------KEHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFCGVAGVQPQSETVWRQADRYGVPRLAFVNKMDRMGADFNKAVQTMKDRLKARA 159
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_DICNV (Elongation factor G OS=Dichelobacter nodosus (strain VCS1703A) GN=fusA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.718e-43
Identity = 93/173 (53.76%), Postives = 124/173 (71.68%), Query Frame = 3 
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTG---RIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKLKIPA 824
            ++K RN+GI AHID+GKTT TER+LFYTG   ++ ++HE        A MD M+ E+E+GITI SAAT C W       + G+   +K+ IN+IDTPGH+DFTIEVER+LRVLDGA ++LC+V GVQ QT TV RQ  +Y VPR+++VNKMDR GAN  + V+ ++ +LK  A
Sbjct:    7 INKYRNLGIMAHIDAGKTTTTERILFYTGVSHKLGEVHEG------AATMDWMEQEQERGITITSAATTCFW-----QGMAGQF--DKHRINIIDTPGHVDFTIEVERSLRVLDGACLVLCSVGGVQPQTETVWRQANKYKVPRIAYVNKMDRTGANFLRVVKQMHDRLKANA 166
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_YERPY (Elongation factor G OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fusA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.243e-43
Identity = 94/167 (56.29%), Postives = 118/167 (70.66%), Query Frame = 3 
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKD-EKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKL 812
            +++ RNIGI+AHID+GKTT TER+LFYTG    I EV       A MD M+ E+E+GITI SAAT C W        +G  K  E +H+N+IDTPGH+DFTIEVER++RVLDGAVM+ CAV GVQ Q+ TV RQ  +Y VPR++FVNKMDR GAN  + V  +  +L
Sbjct:    7 IERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFW--------SGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRL 162
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_YERPS (Elongation factor G OS=Yersinia pseudotuberculosis GN=fusA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.243e-43
Identity = 94/167 (56.29%), Postives = 118/167 (70.66%), Query Frame = 3 
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKD-EKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKL 812
            +++ RNIGI+AHID+GKTT TER+LFYTG    I EV       A MD M+ E+E+GITI SAAT C W        +G  K  E +H+N+IDTPGH+DFTIEVER++RVLDGAVM+ CAV GVQ Q+ TV RQ  +Y VPR++FVNKMDR GAN  + V  +  +L
Sbjct:    7 IERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFW--------SGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRL 162
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_YERPP (Elongation factor G OS=Yersinia pestis (strain Pestoides F) GN=fusA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.243e-43
Identity = 94/167 (56.29%), Postives = 118/167 (70.66%), Query Frame = 3 
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKD-EKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKL 812
            +++ RNIGI+AHID+GKTT TER+LFYTG    I EV       A MD M+ E+E+GITI SAAT C W        +G  K  E +H+N+IDTPGH+DFTIEVER++RVLDGAVM+ CAV GVQ Q+ TV RQ  +Y VPR++FVNKMDR GAN  + V  +  +L
Sbjct:    7 IERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFW--------SGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRL 162
[Close]
BLAST of FC899094 vs. ExPASy Swiss-Prot
Match: EFG_YERPN (Elongation factor G OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fusA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.243e-43
Identity = 94/167 (56.29%), Postives = 118/167 (70.66%), Query Frame = 3 
Query:  315 LDKVRNIGIAAHIDSGKTTATERVLFYTGRIKDIHEVRGKDAVGAKMDSMDLEREKGITIQSAATFCDWVKKTPDPVTGELKD-EKYHINLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTVTVDRQMKRYNVPRVSFVNKMDRAGANPWKAVEGINQKL 812
            +++ RNIGI+AHID+GKTT TER+LFYTG    I EV       A MD M+ E+E+GITI SAAT C W        +G  K  E +H+N+IDTPGH+DFTIEVER++RVLDGAVM+ CAV GVQ Q+ TV RQ  +Y VPR++FVNKMDR GAN  + V  +  +L
Sbjct:    7 IERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFW--------SGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRL 162
The following BLAST results are available for this feature:
BLAST of FC899094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG_CHLTE8.238e-4656.63Elongation factor G OS=Chlorobium tepidum GN=fusA-... [more]
EFG_GLOVI2.650e-4456.14Elongation factor G OS=Gloeobacter violaceus GN=fu... [more]
EFG_SULDN3.461e-4457.74Elongation factor G OS=Sulfurimonas denitrificans ... [more]
EFG_TOLAT5.904e-4456.73Elongation factor G OS=Tolumonas auensis (strain D... [more]
EFG_MAGSM1.315e-4357.06Elongation factor G OS=Magnetococcus sp. (strain M... [more]
EFG_DICNV1.718e-4353.76Elongation factor G OS=Dichelobacter nodosus (stra... [more]
EFG_YERPY2.243e-4356.29Elongation factor G OS=Yersinia pseudotuberculosis... [more]
EFG_YERPS2.243e-4356.29Elongation factor G OS=Yersinia pseudotuberculosis... [more]
EFG_YERPP2.243e-4356.29Elongation factor G OS=Yersinia pestis (strain Pes... [more]
EFG_YERPN2.243e-4356.29Elongation factor G OS=Yersinia pestis bv. Antiqua... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA43CB08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA43CB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899094 ID=FC899094; Name=FC899094; organism=Citrus clementina; type=EST; length=831bp
CAACACATCACGTTCGTTTGACAATGCGAGCCACAGCCCTCGCGCGCAAT
GCCTTGCGCCAGCAGCCTGCCTTGCGCAATGCCGTAAACCCTTCTTCCAC
CTCCTACCGCACATTCGCCTCCGCCGCCGCCCTCCCTTCATCACGCCTTC
AGACTCCCACCTTTGCATCACAAAAGACACCACGCACAGTACAATACCAG
TCCCGGAGATGGAACGCCACTGCCCAGGCCATCCAGGAAGCCGCCGCCCA
CGACCCTTCAAGTCTCACCCAGGACGCGATCGTGGAGAACCTCGACCCCA
AGGAGGCCGCCCGTCTCGACAAGGTCAGGAATATCGGTATCGCAGCCCAC
ATTGATTCCGGAAAGACCACCGCCACCGAGCGCGTGCTGTTTTACACCGG
TCGTATCAAGGATATCCACGAGGTCCGTGGCAAAGATGCCGTGGGCGCAA
AAATGGACAGTATGGACCTCGAGAGGGAAAAGGGAATCACCATCCAGTCT
GCCGCCACATTCTGTGACTGGGTCAAGAAGACTCCTGATCCCGTCACCGG
CGAGCTCAAGGATGAGAAATACCACATCAACTTGATCGACACCCCCGGTC
ATATCGACTTCACCATTGAAGTCGAGCGTGCATTGCGTGTCTTGGACGGC
GCAGTCATGATCCTTTGCGCTGTCTCTGGTGTGCAGTCGCAGACCGTCAC
CGTCGACAGGCAGATGAAGCGCTACAACGTCCCGCGTGTCAGCTTCGTCA
ACAAGATGGACCGCGCCGGTGCCAACCCTTGGAAGGCCGTCGAGGGCATC
AACCAGAAGCTCAAGATTCCCGCTGCCGCCG
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