FC899096

Overview
NameFC899096
Unique NameFC899096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_VIBFM (Malate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.707e-27
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFNINAGIVK+L E IA  CPKA + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLTEKIAVTCPKACIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_VIBF1 (Malate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.707e-27
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFNINAGIVK+L E IA  CPKA + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLTEKIAVTCPKACIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_ESCF3 (Malate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.707e-27
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IA  CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFAGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIATTCPKACIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_CITK8 (Malate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.707e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IA  CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIATTCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.707e-27
Identity = 68/117 (58.12%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KV +LGA+GGIGQPL++L+K++ P  S L LYDV   TPGV  DISH+ T+  V GF G    E AL G DIV+I AGV RKPGMTR DLFN+NAGI++ L E +A+ CP+A V +I
Sbjct:    2 KVTLLGASGGIGQPLSLLLKLHLPAESDLSLYDVAPVTPGVAKDISHIPTSVEVEGFGGDDPSE-ALKGADIVLICAGVARKPGMTRADLFNVNAGIIQNLVEKVAQVCPQACVCII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_YERPY (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_YERPS (Malate dehydrogenase OS=Yersinia pseudotuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_YERPP (Malate dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_YERPN (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_YERPG (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
The following BLAST results are available for this feature:
BLAST of FC899096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_VIBFM1.707e-2758.12Malate dehydrogenase OS=Vibrio fischeri (strain MJ... [more]
MDH_VIBF11.707e-2758.12Malate dehydrogenase OS=Vibrio fischeri (strain AT... [more]
MDH_ESCF31.707e-2757.26Malate dehydrogenase OS=Escherichia fergusonii (st... [more]
MDH_CITK81.707e-2758.12Malate dehydrogenase OS=Citrobacter koseri (strain... [more]
MDH_ACTSZ1.707e-2758.12Malate dehydrogenase OS=Actinobacillus succinogene... [more]
MDH_YERPY2.229e-2757.26Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPS2.229e-2757.26Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPP2.229e-2757.26Malate dehydrogenase OS=Yersinia pestis (strain Pe... [more]
MDH_YERPN2.229e-2757.26Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPG2.229e-2757.26Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA31AF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA31AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899096 ID=FC899096; Name=FC899096; organism=Citrus clementina; type=EST; length=541bp
ATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCTCCAGAAACTCAG
AACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCATTGCGAGAATCG
CTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGAGAGAGTTCGGGT
TTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCCCGGATTCAAGGT
GGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTCTGGCTATGTTGA
TGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAAT
ACTCCTGGGGTTACTGCCGATATCAGTCACATGGATACAAATGCTGTGGT
ACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCCTCACGGGCATGG
ACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGG
GATGATCTGTTCAATATCAATGCCGGAATTGTTAAGACCCTTTGTGAAGG
AATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACTTGATTA
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