FC899096

Overview
NameFC899096
Unique NameFC899096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_YERPE (Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_YERPB (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_YERPA (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_YERP3 (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_VIBPA (Malate dehydrogenase OS=Vibrio parahaemolyticus GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK+L E IA  CPKA V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V++ AGV RKPGM R DLFN+NAGIVK L E IA  CPKA V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAGEDPTP-ALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALAEKIAVVCPKACVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHEDO (Malate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL   D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVDADVVLISAGVARKPGMDRSDLFNINAGIVRNLMEKVAATCPKALVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHEB9 (Malate dehydrogenase OS=Shewanella baltica (strain OS195) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSHLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPTALVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHEB8 (Malate dehydrogenase OS=Shewanella baltica (strain OS185) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSHLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPTALVGII 117
[Close]
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHEB5 (Malate dehydrogenase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSHLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPTALVGII 117
The following BLAST results are available for this feature:
BLAST of FC899096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_YERPE2.229e-2757.26Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=... [more]
MDH_YERPB2.229e-2757.26Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPA2.229e-2757.26Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERP32.229e-2757.26Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_VIBPA2.229e-2758.12Malate dehydrogenase OS=Vibrio parahaemolyticus GN... [more]
MDH_VIBCH2.229e-2757.26Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDH_SHEDO2.229e-2757.26Malate dehydrogenase OS=Shewanella denitrificans (... [more]
MDH_SHEB92.229e-2757.26Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_SHEB82.229e-2757.26Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_SHEB52.229e-2757.26Malate dehydrogenase OS=Shewanella baltica (strain... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA31AF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA31AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899096 ID=FC899096; Name=FC899096; organism=Citrus clementina; type=EST; length=541bp
ATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCTCCAGAAACTCAG
AACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCATTGCGAGAATCG
CTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGAGAGAGTTCGGGT
TTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCCCGGATTCAAGGT
GGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTCTGGCTATGTTGA
TGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAAT
ACTCCTGGGGTTACTGCCGATATCAGTCACATGGATACAAATGCTGTGGT
ACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCCTCACGGGCATGG
ACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGG
GATGATCTGTTCAATATCAATGCCGGAATTGTTAAGACCCTTTGTGAAGG
AATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACTTGATTA
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