FC899096

Overview
NameFC899096
Unique NameFC899096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_VIBVU (Malate dehydrogenase OS=Vibrio vulnificus GN=mdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T+  ++G+ G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK+L E IA  CP A + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAERIAVVCPNACIGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHEHH (Malate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+    PGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVIPGVAVDLSHIPTAVEVKGFAGEDPTA-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_HAEIG (Malate dehydrogenase OS=Haemophilus influenzae (strain PittGG) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K+  P  + L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTDLALYDIAPVTPGVAVDVSHIPTAVNVKGFSGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRGLIEKVAITCPKACVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_HAEI8 (Malate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K+  P  + L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTDLALYDIAPVTPGVAVDVSHIPTAVNVKGFSGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRGLIEKVAITCPKACVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHEPW (Malate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.470e-27
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A   PKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTDVEVKGFAGEDPTA-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATSPKALIGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SERP5 (Malate dehydrogenase OS=Serratia proteamaculans (strain 568) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.470e-27
Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +A  CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALHGADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIQQVATTCPKACIGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_VIBVY (Malate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK+L E IA  CP A + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAERIAVVCPNACIGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_VIBSL (Malate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK+L E IA  CP A V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVTCPTACVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_VIBHB (Malate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK+L E IA  CP A V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPTACVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_PHOPR (Malate dehydrogenase OS=Photobacterium profundum GN=mdh PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.106e-26
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G      AL G D+V+I AGV RKPGM R DLFN+NAGI+K+L E IA  CPKA V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNGLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYGGVDPTP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIIKSLAEKIAVVCPKACVGII 117          
The following BLAST results are available for this feature:
BLAST of FC899096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_VIBVU4.966e-2756.41Malate dehydrogenase OS=Vibrio vulnificus GN=mdh P... [more]
MDH_SHEHH4.966e-2757.26Malate dehydrogenase OS=Shewanella halifaxensis (s... [more]
MDH_HAEIG4.966e-2758.12Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_HAEI84.966e-2758.12Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_SHEPW8.470e-2757.26Malate dehydrogenase OS=Shewanella piezotolerans (... [more]
MDH_SERP58.470e-2755.56Malate dehydrogenase OS=Serratia proteamaculans (s... [more]
MDH_VIBVY1.106e-2656.41Malate dehydrogenase OS=Vibrio vulnificus (strain ... [more]
MDH_VIBSL1.106e-2657.26Malate dehydrogenase OS=Vibrio splendidus (strain ... [more]
MDH_VIBHB1.106e-2657.26Malate dehydrogenase OS=Vibrio harveyi (strain ATC... [more]
MDH_PHOPR1.106e-2657.26Malate dehydrogenase OS=Photobacterium profundum G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA31AF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA31AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899096 ID=FC899096; Name=FC899096; organism=Citrus clementina; type=EST; length=541bp
ATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCTCCAGAAACTCAG
AACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCATTGCGAGAATCG
CTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGAGAGAGTTCGGGT
TTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCCCGGATTCAAGGT
GGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTCTGGCTATGTTGA
TGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAAT
ACTCCTGGGGTTACTGCCGATATCAGTCACATGGATACAAATGCTGTGGT
ACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCCTCACGGGCATGG
ACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGG
GATGATCTGTTCAATATCAATGCCGGAATTGTTAAGACCCTTTGTGAAGG
AATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACTTGATTA
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