FC899096

Overview
NameFC899096
Unique NameFC899096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:157..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHEFN (Malate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=mdh PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.382e-29
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  V+GF GQ    DAL G D+V++ AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTDVEVKGFAGQDPT-DALVGADVVLMSAGVARKPGMDRSDLFNINAGIVRNLMEKVAVTCPKALVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.062e-29
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            K+AVLGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   ++GF G+  +  AL   D+V+I AGV RKPGM R DLFNINAGIVK L E +AK CPKA V +I
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPIP-ALENADVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_MANSM (Malate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=mdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.306e-29
Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K+  P  S L LYDV   TPGV  D+SH+ T+ VV GF G    E AL G DIV+I AGV RKPGMTR DLF +NAGI+++L E +A+ CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSSLSLYDVAPVTPGVAKDLSHIPTDVVVEGFAGTDPSE-ALKGADIVLISAGVARKPGMTRADLFGVNAGIIRSLTEKVAEQCPKACVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.929e-29
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A+ CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKVQGFAGEDPTP-ALQGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAQVCPKACVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.050e-29
Identity = 69/117 (58.97%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            K+AVLGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   ++GF G+     AL   D+V+I AGV RKPGM R DLFNINAGIVK L E +AK CPKA V +I
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPTP-ALENADVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 1
Query:  193 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ--LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            +KV VLGA GGIGQPL++L+K+N  V+ L LYD+    GV  D+SH+ TN+VV+GF  ++   L +AL   D+V+IPAGVPRKPGMTRDDLF INA IV+ L    A+  P A + +I
Sbjct:   18 YKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPGMTRDDLFAINASIVRDLAAATAESAPNAAILVI 135          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.016e-28
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ L++L+K   P  + L LYDV    PGV  D+SH+ T+  V GF G+  L  ALTG DIV+IPAGVPRKPGM R DLFNINAGIV+ L + +A  CP+A + +I
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGTELALYDVAPVVPGVAVDLSHIPTDVKVEGF-GKDDLAKALTGSDIVLIPAGVPRKPGMDRSDLFNINAGIVRNLVDSVADNCPEACLCII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_AERHH (Malate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIVK L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNRLPAGSELSLYDIAPVTPGVAVDLSHIPTDVKVKGFCGEDP-SPALVGADVVLISAGVARKPGMDRSDLFNINAGIVKNLVEKCAASCPKALIGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHESW (Malate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.439e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGII 117          
BLAST of FC899096 vs. ExPASy Swiss-Prot
Match: MDH_SHEPC (Malate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.439e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  196 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 540
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGII 117          
The following BLAST results are available for this feature:
BLAST of FC899096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_SHEFN2.382e-2959.83Malate dehydrogenase OS=Shewanella frigidimarina (... [more]
MDH_HAES24.062e-2958.97Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_MANSM5.306e-2960.68Malate dehydrogenase OS=Mannheimia succiniciproduc... [more]
MDH_PASMU6.929e-2959.83Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_HAES19.050e-2958.97Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDHM_YEAST1.182e-2854.24Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDH_PSEA62.016e-2858.97Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]
MDH_AERHH2.633e-2858.97Malate dehydrogenase OS=Aeromonas hydrophila subsp... [more]
MDH_SHESW3.439e-2858.12Malate dehydrogenase OS=Shewanella sp. (strain W3-... [more]
MDH_SHEPC3.439e-2858.12Malate dehydrogenase OS=Shewanella putrefaciens (s... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA31AF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA31AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899096 ID=FC899096; Name=FC899096; organism=Citrus clementina; type=EST; length=541bp
ATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCTCCAGAAACTCAG
AACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCATTGCGAGAATCG
CTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGAGAGAGTTCGGGT
TTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCCCGGATTCAAGGT
GGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTCTGGCTATGTTGA
TGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAAT
ACTCCTGGGGTTACTGCCGATATCAGTCACATGGATACAAATGCTGTGGT
ACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCCTCACGGGCATGG
ACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGG
GATGATCTGTTCAATATCAATGCCGGAATTGTTAAGACCCTTTGTGAAGG
AATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACTTGATTA
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